Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QHF92_RS12605 Genome accession   NZ_CP123994
Coordinates   2521076..2521411 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus inaquosorum strain M3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2516076..2526411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS12585 (QHF92_12585) gcvT 2516664..2517752 (-) 1089 WP_060399011.1 glycine cleavage system aminomethyltransferase GcvT -
  QHF92_RS12590 (QHF92_12590) - 2518196..2519869 (+) 1674 WP_060399012.1 SNF2-related protein -
  QHF92_RS12595 (QHF92_12595) - 2519890..2520684 (+) 795 WP_003236936.1 YqhG family protein -
  QHF92_RS12600 (QHF92_12600) sinI 2520869..2521042 (+) 174 WP_003226347.1 anti-repressor SinI family protein Regulator
  QHF92_RS12605 (QHF92_12605) sinR 2521076..2521411 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QHF92_RS12610 (QHF92_12610) tasA 2521506..2522291 (-) 786 WP_003236939.1 biofilm matrix protein TasA -
  QHF92_RS12615 (QHF92_12615) - 2522355..2522927 (-) 573 WP_080429111.1 signal peptidase I -
  QHF92_RS12620 (QHF92_12620) tapA 2522911..2523675 (-) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  QHF92_RS12625 (QHF92_12625) - 2523948..2524274 (+) 327 WP_029316858.1 YqzG/YhdC family protein -
  QHF92_RS12630 (QHF92_12630) - 2524316..2524495 (-) 180 WP_003236949.1 YqzE family protein -
  QHF92_RS12635 (QHF92_12635) comGG 2524566..2524940 (-) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  QHF92_RS12640 (QHF92_12640) comGF 2524941..2525324 (-) 384 WP_060399016.1 competence type IV pilus minor pilin ComGF Machinery gene
  QHF92_RS12645 (QHF92_12645) comGE 2525350..2525694 (-) 345 WP_060399017.1 competence type IV pilus minor pilin ComGE Machinery gene
  QHF92_RS12650 (QHF92_12650) comGD 2525678..2526109 (-) 432 WP_060399018.1 competence type IV pilus minor pilin ComGD Machinery gene
  QHF92_RS12655 (QHF92_12655) comGC 2526099..2526395 (-) 297 WP_003236957.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=823727 QHF92_RS12605 WP_003226345.1 2521076..2521411(+) (sinR) [Bacillus inaquosorum strain M3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=823727 QHF92_RS12605 WP_003226345.1 2521076..2521411(+) (sinR) [Bacillus inaquosorum strain M3]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1