Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   QHF92_RS06450 Genome accession   NZ_CP123994
Coordinates   1338751..1339902 (+) Length   383 a.a.
NCBI ID   WP_060398379.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1333751..1344902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS06420 (QHF92_06420) - 1334412..1335629 (+) 1218 WP_080428989.1 MFS transporter -
  QHF92_RS06425 (QHF92_06425) - 1335804..1336382 (+) 579 WP_003239283.1 GNAT family N-acetyltransferase -
  QHF92_RS06430 (QHF92_06430) spx 1336563..1336958 (+) 396 WP_003239281.1 transcriptional regulator Spx -
  QHF92_RS06435 (QHF92_06435) - 1337001..1337657 (-) 657 WP_019258060.1 TerC family protein -
  QHF92_RS06440 (QHF92_06440) - 1337842..1337967 (+) 126 WP_119913679.1 hypothetical protein -
  QHF92_RS06445 (QHF92_06445) mecA 1337934..1338590 (+) 657 WP_060398378.1 adaptor protein MecA Regulator
  QHF92_RS06450 (QHF92_06450) coiA 1338751..1339902 (+) 1152 WP_060398379.1 competence protein CoiA family protein Machinery gene
  QHF92_RS06455 (QHF92_06455) pepF 1340132..1341961 (+) 1830 WP_166638382.1 oligoendopeptidase F -
  QHF92_RS06460 (QHF92_06460) - 1342000..1342167 (-) 168 WP_032732134.1 hypothetical protein -
  QHF92_RS06465 (QHF92_06465) spxH 1342481..1343380 (-) 900 WP_060398380.1 protease adaptor protein SpxH -
  QHF92_RS06470 (QHF92_06470) - 1343377..1343775 (-) 399 WP_003239269.1 thiol management oxidoreductase component -
  QHF92_RS06475 (QHF92_06475) - 1344031..1344768 (-) 738 WP_060398381.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44989.37 Da        Isoelectric Point: 9.9204

>NTDB_id=823712 QHF92_RS06450 WP_060398379.1 1338751..1339902(+) (coiA) [Bacillus inaquosorum strain M3]
MFSAVTKDGQMVHLLGAQRSQKLKQRRFFCPACGGELDVKLGLQKAPHFAHKQNKCCSIDIEPESAYHLEGKRQLYVWLK
TQQASPLLEPYIKKINQRPDIMAKIKRHMLAVEYQCANLAPDVFQKRTEGFKQEGIIPQWIVGNSRLKRTAPSFYQLSAF
HWQFINASPYRELICYCPETRSFRRLSHIIPFYTNHSYSFVQTIPIHRAGVKDLFFTEPMPSFQYSGWTKAIHRFRHKPH
RFISKETNRLRLLFYEKRQTPLSFLPTEVFVPVIKGAVFHSPVFVWQGFLYLFITDLGYKGAPIRFSAVLQQCKLHIYKK
NISLRYECSEDCLSEAVKQYIDFLCKKGFLRETQKEIYVLNQPKEGIHSIQDLMERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=823712 QHF92_RS06450 WP_060398379.1 1338751..1339902(+) (coiA) [Bacillus inaquosorum strain M3]
GTGTTTAGTGCTGTGACTAAAGACGGCCAAATGGTTCACCTTCTAGGCGCTCAGCGAAGCCAGAAATTAAAGCAGAGACG
ATTCTTCTGTCCGGCGTGCGGGGGAGAGCTTGATGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTCGCCCATAAACAGA
ACAAGTGCTGCTCGATAGACATAGAACCGGAAAGCGCCTATCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACGCAACAGGCTTCTCCACTATTAGAACCGTATATCAAGAAAATCAATCAAAGACCCGACATCATGGCGAAGATCAAGAG
ACACATGCTTGCTGTTGAGTATCAATGTGCCAATCTTGCTCCCGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCACAGTGGATTGTGGGAAACAGCCGCTTAAAACGAACTGCTCCATCCTTTTATCAGCTTTCTGCTTTC
CATTGGCAGTTTATCAATGCGAGCCCATACAGGGAACTGATCTGTTATTGCCCGGAAACGCGTTCTTTCCGCCGGCTAAG
CCATATCATCCCGTTTTACACAAACCATTCTTATTCCTTCGTTCAAACGATCCCTATCCATCGGGCAGGTGTAAAAGATC
TTTTTTTCACTGAACCGATGCCCTCATTTCAATACTCCGGCTGGACAAAAGCGATTCACCGTTTTCGCCATAAACCCCAC
CGGTTCATCTCCAAGGAAACAAATCGCCTCAGGCTGCTGTTTTATGAAAAGCGGCAGACGCCCCTTTCTTTTCTTCCGAC
TGAAGTGTTTGTTCCTGTTATAAAAGGGGCTGTTTTTCATAGTCCGGTTTTTGTGTGGCAGGGGTTTCTATATCTGTTTA
TTACGGATCTTGGATATAAAGGCGCGCCAATTCGCTTTTCCGCCGTTTTACAGCAGTGCAAACTGCACATTTATAAAAAG
AACATTTCGCTCAGATACGAATGCAGCGAAGATTGTCTTTCAGAAGCGGTGAAACAGTACATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAATATATGTGCTGAATCAGCCTAAAGAGGGTATACACTCAATACAGGATCTCA
TGGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

87.936

97.389

0.856