Detailed information NTG0823676

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QE150_RS17000
• Genome accession: NZ_CP123993
• Coordinates: 3430170..3431030 (+)
• Length: 286 a.a.
• NCBI ID: WP_223106647.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain Ab4294
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3425170..3436030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QE150_RS16980 (QE150_16985)	secG	3425775..3426104 (-)	330	WP_270901227.1	preprotein translocase subunit SecG	-
QE150_RS16985 (QE150_16990)	tpiA	3426117..3426911 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
QE150_RS16990 (QE150_16995)	pilB	3427202..3428914 (+)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QE150_RS16995 (QE150_17000)	pilC	3428944..3430170 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
QE150_RS17000 (QE150_17005)	pilD	3430170..3431030 (+)	861	WP_223106647.1	A24 family peptidase	Machinery gene
QE150_RS17005 (QE150_17010)	coaE	3431032..3431628 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
QE150_RS17010 (QE150_17015)	-	3431625..3432539 (-)	915	WP_000075011.1	DMT family transporter	-
QE150_RS17015 (QE150_17020)	rlmB	3432575..3433324 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
QE150_RS17020 (QE150_17025)	-	3433426..3433752 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
QE150_RS17025 (QE150_17030)	-	3433829..3435139 (-)	1311	WP_270901226.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32115.55 Da
• Isoelectric Point: 7.1041

>NTDB_id=823676 QE150_RS17000 WP_223106647.1 3430170..3431030(+) (pilD) [Acinetobacter baumannii strain Ab4294]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPINIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=823676 QE150_RS17000 WP_223106647.1 3430170..3431030(+) (pilD) [Acinetobacter baumannii strain Ab4294]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAA
TATTCGCTACCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.137	94.755	0.504
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437