Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QE150_RS02785 Genome accession   NZ_CP123993
Coordinates   416662..417297 (-) Length   211 a.a.
NCBI ID   WP_000472265.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411662..422297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02750 (QE150_02750) mlaE 411997..412773 (+) 777 WP_102760247.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  QE150_RS02755 (QE150_02755) - 412773..413453 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  QE150_RS02760 (QE150_02760) - 413480..414121 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  QE150_RS02765 (QE150_02765) - 414133..414420 (+) 288 WP_000250997.1 STAS domain-containing protein -
  QE150_RS02770 (QE150_02770) - 414491..415504 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  QE150_RS02775 (QE150_02775) - 415662..416243 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  QE150_RS02780 (QE150_02780) - 416258..416659 (+) 402 WP_270901075.1 NUDIX domain-containing protein -
  QE150_RS02785 (QE150_02785) comF 416662..417297 (-) 636 WP_000472265.1 phosphoribosyltransferase family protein Machinery gene
  QE150_RS02790 (QE150_02790) recG 417290..419335 (-) 2046 WP_031993737.1 ATP-dependent DNA helicase RecG -
  QE150_RS02795 (QE150_02795) - 419356..420171 (+) 816 WP_000547774.1 NAD(P)H-binding protein -
  QE150_RS02800 (QE150_02800) adeT2 420251..421237 (+) 987 WP_086263529.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24584.74 Da        Isoelectric Point: 9.7140

>NTDB_id=823651 QE150_RS02785 WP_000472265.1 416662..417297(-) (comF) [Acinetobacter baumannii strain Ab4294]
MFKFLNPQYLFHLLSPCLLCEIGTREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=823651 QE150_RS02785 WP_000472265.1 416662..417297(-) (comF) [Acinetobacter baumannii strain Ab4294]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAACCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGTTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981