Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   R8586_RS09960 Genome accession   NZ_AP026922
Coordinates   1900270..1901169 (-) Length   299 a.a.
NCBI ID   WP_000904872.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700038     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895270..1906169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8586_RS09940 (PC0038_19680) rsmA 1895919..1896791 (-) 873 WP_001216845.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  R8586_RS09945 (PC0038_19690) - 1897042..1897335 (-) 294 Protein_1945 hypothetical protein -
  R8586_RS09950 (PC0038_19700) - 1897328..1897969 (-) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  R8586_RS09955 (PC0038_19710) - 1897971..1900001 (-) 2031 WP_000825273.1 bacteriocin-associated integral membrane family protein -
  R8586_RS09960 (PC0038_19720) comR 1900270..1901169 (-) 900 WP_000904872.1 helix-turn-helix transcriptional regulator Regulator
  R8586_RS09965 (PC0038_19730) rnmV 1901241..1901801 (-) 561 WP_000660005.1 ribonuclease M5 -
  R8586_RS09970 (PC0038_19740) - 1901801..1902574 (-) 774 WP_000575619.1 TatD family hydrolase -
  R8586_RS09975 (PC0038_19750) - 1902879..1903850 (-) 972 Protein_1951 DUF1542 domain-containing protein -
  R8586_RS09980 (PC0038_19760) rpmH 1904056..1904190 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  R8586_RS09985 (PC0038_19770) - 1904598..1905551 (+) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35327.19 Da        Isoelectric Point: 5.0853

>NTDB_id=82353 R8586_RS09960 WP_000904872.1 1900270..1901169(-) (comR) [Streptococcus pneumoniae strain PZ900700038]
MLIGQKIKEIRIEKGVSRPYFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMSQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=82353 R8586_RS09960 WP_000904872.1 1900270..1901169(-) (comR) [Streptococcus pneumoniae strain PZ900700038]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAGTTAGTCGTCCATATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGCCTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGTCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

37.801

97.324

0.368
  comR Streptococcus suis 05ZYH33

37.801

97.324

0.368
  comR Streptococcus mutans UA159

37.415

98.328

0.368

Multiple sequence alignment