Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   QHG38_RS00165 Genome accession   NZ_CP123979
Coordinates   37947..39284 (-) Length   445 a.a.
NCBI ID   WP_017176076.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SH1275     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32947..44284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG38_RS00140 (QHG38_00140) - 34266..34487 (-) 222 WP_240560988.1 hypothetical protein -
  QHG38_RS00145 (QHG38_00145) - 34502..35005 (-) 504 WP_076742196.1 DUF1643 domain-containing protein -
  QHG38_RS00150 (QHG38_00150) - 35021..35332 (-) 312 WP_031870514.1 DUF960 family protein -
  QHG38_RS00155 (QHG38_00155) - 35419..35769 (-) 351 WP_240560990.1 SAUGI family uracil-DNA glycosylase inhibitor -
  QHG38_RS00160 (QHG38_00160) ccrB 36288..37913 (-) 1626 WP_017176077.1 recombinase family protein Machinery gene
  QHG38_RS00165 (QHG38_00165) ccrA 37947..39284 (-) 1338 WP_017176076.1 recombinase family protein Machinery gene
  QHG38_RS00170 (QHG38_00170) - 39472..41241 (-) 1770 WP_240560992.1 DUF927 domain-containing protein -
  QHG38_RS00175 (QHG38_00175) - 41241..41537 (-) 297 WP_240560994.1 single-stranded DNA-binding protein -
  QHG38_RS00180 (QHG38_00180) - 41708..43291 (+) 1584 WP_017176073.1 hypothetical protein -
  QHG38_RS00185 (QHG38_00185) - 43568..43921 (-) 354 WP_000278595.1 PTS glucitol/sorbitol transporter subunit IIA -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 52044.68 Da        Isoelectric Point: 9.9417

>NTDB_id=823520 QHG38_RS00165 WP_017176076.1 37947..39284(-) (ccrA) [Staphylococcus haemolyticus strain SH1275]
MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTIDTVKAPTIKAVFNYYLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDVETKTTLNHEQLIEKLAQGKIDAETFREQTQSLHQQSKPISSISAYQIRKAFQ
NIIQQRFTLNMLYPYIDEINISKNKSLAGIYFKNEPLNIVKQTMK

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=823520 QHG38_RS00165 WP_017176076.1 37947..39284(-) (ccrA) [Staphylococcus haemolyticus strain SH1275]
ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCGAGGC
ATTAGCCAAAAAACATAATATTCAATACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAACGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGATGTATTATGTTGTTACAGATTAAACCGACTTCATCGCAAT
CTTAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAATAAAAGCTGTATTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAACTTCATTAATCGCAAGCCTTATCAAGTGCGTAATATTATCCTCA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTAAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCTTATTGTCATTCGACACTCACAAACATGACTGTCCGCAAACCAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAATGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TGTAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAACAACGTTTCACACTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAGCCT
CGCTGGCATCTATTTCAAAAACGAACCACTGAATATTGTAAAGCAGACTATGAAATGA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

96.629

100

0.966
  ccrA Staphylococcus aureus N315

74.157

100

0.742