Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   QHG38_RS00160 Genome accession   NZ_CP123979
Coordinates   36288..37913 (-) Length   541 a.a.
NCBI ID   WP_017176077.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SH1275     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31288..42913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG38_RS00135 (QHG38_00135) - 31373..34087 (-) 2715 WP_240560985.1 DNA methyltransferase -
  QHG38_RS00140 (QHG38_00140) - 34266..34487 (-) 222 WP_240560988.1 hypothetical protein -
  QHG38_RS00145 (QHG38_00145) - 34502..35005 (-) 504 WP_076742196.1 DUF1643 domain-containing protein -
  QHG38_RS00150 (QHG38_00150) - 35021..35332 (-) 312 WP_031870514.1 DUF960 family protein -
  QHG38_RS00155 (QHG38_00155) - 35419..35769 (-) 351 WP_240560990.1 SAUGI family uracil-DNA glycosylase inhibitor -
  QHG38_RS00160 (QHG38_00160) ccrB 36288..37913 (-) 1626 WP_017176077.1 recombinase family protein Machinery gene
  QHG38_RS00165 (QHG38_00165) ccrA 37947..39284 (-) 1338 WP_017176076.1 recombinase family protein Machinery gene
  QHG38_RS00170 (QHG38_00170) - 39472..41241 (-) 1770 WP_240560992.1 DUF927 domain-containing protein -
  QHG38_RS00175 (QHG38_00175) - 41241..41537 (-) 297 WP_240560994.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62311.27 Da        Isoelectric Point: 9.7603

>NTDB_id=823519 QHG38_RS00160 WP_017176077.1 36288..37913(-) (ccrB) [Staphylococcus haemolyticus strain SH1275]
MDKMKKKLVGGYIRVSTERQVEGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMNRPELQRMLNDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILASFSEFERNTILENIYTGQRQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSAPMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAALNHDIAYKQQQFDE
ISTKLKNLIQTIENNPDLTSALKPTIHQYETQLNDITNQINQLKHQQNQEKPFYDTKQIAALLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFFVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=823519 QHG38_RS00160 WP_017176077.1 36288..37913(-) (ccrB) [Staphylococcus haemolyticus strain SH1275]
ATGGATAAAATGAAGAAAAAGCTTGTAGGAGGCTACATTCGCGTATCCACAGAGAGACAAGTAGAGGGTTATAGCATCGA
GGGACAAATTACACAAATAGAGCAATATTGCCAATTTAATGGCTATGAACTCGTTGATATATATGCAGATCGGGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAATGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTACTTACAATCGTCGAAGAACTTCATCGCCAAAATGTTGAATT
TTTTAGCTTGTCTGAACGCATGGAAGTCAAAAATTCAACAGGCAAGTTAATGCTCCAGATACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACAATTTTAGAGAACATTTACACCGGACAACGTCAAAGAGCTTTAGAGGGCTATTATCAAGGCAATCTT
CCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAGGGTTATGTCACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAATAC
AAAGATTGGAATGATAAACGACGTAAAGGATTAAACGATAAGCCAGTAATCGCTGAAGGTAAACACACGCCTATTATTAG
TCAATCATTATGGGATAAAGTGCAAGCACGTAAGAAACAAGTAAGTGAAAAACCACAAGTCCATGGTAAAGGAACCAATA
TTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCACCTATGGCTGCGAGTAACACCACAAACACACTTAAAGATGGC
ACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGTTAG
AGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTGTCG
AACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAGCACTAAACTTAAAAATCTAATTCAAACCATCGAAAACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTGAATGATATCACAAACCAAATTAATCAACTCAAGCACCAACAAAATCAAGAGAAACCATTTT
ATGATACTAAACAAATCGCTGCTTTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAAGCT
TTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTTTGTTACACTAAAACT
TAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTTTGC
CACAAACCCTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-154)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-355)

Recombinase (Recombinase)

(179-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.443

100

0.806