Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   QEP20_RS19275 Genome accession   NZ_CP123977
Coordinates   3720730..3721875 (+) Length   381 a.a.
NCBI ID   WP_029318693.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3715730..3726875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS19255 (QEP20_19255) albF 3715746..3717026 (+) 1281 WP_128480842.1 pitrilysin family protein -
  QEP20_RS19260 (QEP20_19260) albG 3717023..3717724 (+) 702 WP_069703620.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  QEP20_RS19265 (QEP20_19265) ywhL 3717730..3719106 (-) 1377 WP_069703619.1 YncE family protein -
  QEP20_RS19270 (QEP20_19270) ywhK 3719145..3720500 (-) 1356 WP_015250986.1 YncE family protein -
  QEP20_RS21620 - 3720497..3720727 (-) 231 WP_069703618.1 hypothetical protein -
  QEP20_RS19275 (QEP20_19275) rapF 3720730..3721875 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  QEP20_RS19280 (QEP20_19280) phrF 3721859..3721978 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  QEP20_RS19285 (QEP20_19285) - 3722048..3722212 (-) 165 WP_248719425.1 hypothetical protein -
  QEP20_RS19290 (QEP20_19290) - 3722133..3722542 (+) 410 Protein_3742 YbaK/EbsC family protein -
  QEP20_RS19295 (QEP20_19295) speB 3722573..3723445 (-) 873 WP_003227545.1 agmatinase -
  QEP20_RS19300 (QEP20_19300) speE 3723506..3724336 (-) 831 WP_003227543.1 spermidine synthase -
  QEP20_RS19305 (QEP20_19305) pbpG 3724539..3726614 (+) 2076 WP_038427996.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45594.05 Da        Isoelectric Point: 5.0624

>NTDB_id=823512 QEP20_RS19275 WP_029318693.1 3720730..3721875(+) (rapF) [Bacillus subtilis subsp. subtilis strain WH60A]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=823512 QEP20_RS19275 WP_029318693.1 3720730..3721875(+) (rapF) [Bacillus subtilis subsp. subtilis strain WH60A]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572