Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   QEP20_RS19280 Genome accession   NZ_CP123977
Coordinates   3721859..3721978 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3716859..3726978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS19260 (QEP20_19260) albG 3717023..3717724 (+) 702 WP_069703620.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  QEP20_RS19265 (QEP20_19265) ywhL 3717730..3719106 (-) 1377 WP_069703619.1 YncE family protein -
  QEP20_RS19270 (QEP20_19270) ywhK 3719145..3720500 (-) 1356 WP_015250986.1 YncE family protein -
  QEP20_RS21620 - 3720497..3720727 (-) 231 WP_069703618.1 hypothetical protein -
  QEP20_RS19275 (QEP20_19275) rapF 3720730..3721875 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  QEP20_RS19280 (QEP20_19280) phrF 3721859..3721978 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  QEP20_RS19285 (QEP20_19285) - 3722048..3722212 (-) 165 WP_248719425.1 hypothetical protein -
  QEP20_RS19290 (QEP20_19290) - 3722133..3722542 (+) 410 Protein_3742 YbaK/EbsC family protein -
  QEP20_RS19295 (QEP20_19295) speB 3722573..3723445 (-) 873 WP_003227545.1 agmatinase -
  QEP20_RS19300 (QEP20_19300) speE 3723506..3724336 (-) 831 WP_003227543.1 spermidine synthase -
  QEP20_RS19305 (QEP20_19305) pbpG 3724539..3726614 (+) 2076 WP_038427996.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=823513 QEP20_RS19280 WP_009968329.1 3721859..3721978(+) (phrF) [Bacillus subtilis subsp. subtilis strain WH60A]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=823513 QEP20_RS19280 WP_009968329.1 3721859..3721978(+) (phrF) [Bacillus subtilis subsp. subtilis strain WH60A]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487