Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QEP20_RS16255 Genome accession   NZ_CP123977
Coordinates   3118656..3119300 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3113656..3124300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS16220 (QEP20_16220) mrpB 3114848..3115279 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  QEP20_RS16225 (QEP20_16225) mrpC 3115279..3115620 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QEP20_RS16230 (QEP20_16230) mrpD 3115613..3117094 (+) 1482 WP_015714622.1 Na+/H+ antiporter subunit D -
  QEP20_RS16235 (QEP20_16235) mrpE 3117100..3117576 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  QEP20_RS16240 (QEP20_16240) mrpF 3117576..3117860 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QEP20_RS16245 (QEP20_16245) mnhG 3117844..3118218 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  QEP20_RS16250 (QEP20_16250) yuxO 3118257..3118637 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  QEP20_RS16255 (QEP20_16255) comA 3118656..3119300 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QEP20_RS16260 (QEP20_16260) comP 3119381..3121693 (-) 2313 WP_069703660.1 histidine kinase Regulator
  QEP20_RS16265 (QEP20_16265) comX 3121709..3121930 (-) 222 WP_014480704.1 competence pheromone ComX -
  QEP20_RS16270 (QEP20_16270) - 3121932..3122795 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  QEP20_RS16275 (QEP20_16275) degQ 3122981..3123121 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QEP20_RS16280 (QEP20_16280) - 3123343..3123405 (+) 63 Protein_3141 hypothetical protein -
  QEP20_RS16285 (QEP20_16285) - 3123583..3123951 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=823500 QEP20_RS16255 WP_003220716.1 3118656..3119300(-) (comA) [Bacillus subtilis subsp. subtilis strain WH60A]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=823500 QEP20_RS16255 WP_003220716.1 3118656..3119300(-) (comA) [Bacillus subtilis subsp. subtilis strain WH60A]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1