Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QEP20_RS02160 Genome accession   NZ_CP123977
Coordinates   427074..428222 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 422074..433222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS02140 (QEP20_02140) yclH 422445..423125 (-) 681 WP_128480737.1 ABC transporter ATP-binding protein -
  QEP20_RS02145 (QEP20_02145) yclI 423141..424607 (-) 1467 WP_128480738.1 ABC transporter permease -
  QEP20_RS02150 (QEP20_02150) yclJ 424820..425503 (+) 684 WP_128480739.1 two-component system response regulator YclJ -
  QEP20_RS02155 (QEP20_02155) yclK 425490..426911 (+) 1422 WP_080477807.1 two-component system sensor histidine kinase YclK -
  QEP20_RS02160 (QEP20_02160) rapC 427074..428222 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  QEP20_RS02165 (QEP20_02165) phrC 428206..428328 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  QEP20_RS02170 (QEP20_02170) yczM 428428..428517 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  QEP20_RS02175 (QEP20_02175) yczN 428599..428712 (-) 114 WP_032678937.1 YjcZ family sporulation protein -
  QEP20_RS02180 (QEP20_02180) thrD 428865..430229 (-) 1365 WP_029726569.1 aspartate kinase -
  QEP20_RS02185 (QEP20_02185) ceuB 430614..431564 (+) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  QEP20_RS02190 (QEP20_02190) yclO 431557..432504 (+) 948 WP_015252820.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=823447 QEP20_RS02160 WP_014475800.1 427074..428222(+) (rapC) [Bacillus subtilis subsp. subtilis strain WH60A]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=823447 QEP20_RS02160 WP_014475800.1 427074..428222(+) (rapC) [Bacillus subtilis subsp. subtilis strain WH60A]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTAGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACGTTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568