Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFE45_RS00040 Genome accession   NZ_CP123971
Coordinates   9545..10096 (+) Length   183 a.a.
NCBI ID   WP_003708930.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain ZSA5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1532..14970 9545..10096 within 0


Gene organization within MGE regions


Location: 1532..14970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFE45_RS00010 (QFE45_00010) dnaN 1532..2671 (+) 1140 WP_044004229.1 DNA polymerase III subunit beta -
  QFE45_RS00015 (QFE45_00015) yaaA 3085..3306 (+) 222 WP_003701414.1 S4 domain-containing protein YaaA -
  QFE45_RS00020 (QFE45_00020) recF 3306..4445 (+) 1140 WP_003705635.1 DNA replication/repair protein RecF -
  QFE45_RS00025 (QFE45_00025) gyrB 4448..6406 (+) 1959 WP_044004246.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QFE45_RS00030 (QFE45_00030) gyrA 6443..8995 (+) 2553 WP_044004249.1 DNA gyrase subunit A -
  QFE45_RS00035 (QFE45_00035) rpsF 9208..9504 (+) 297 WP_269148675.1 30S ribosomal protein S6 -
  QFE45_RS00040 (QFE45_00040) ssb 9545..10096 (+) 552 WP_003708930.1 single-stranded DNA-binding protein Machinery gene
  QFE45_RS00045 (QFE45_00045) rpsR 10118..10354 (+) 237 WP_003701427.1 30S ribosomal protein S18 -
  QFE45_RS00050 (QFE45_00050) - 10560..11849 (+) 1290 WP_044005740.1 ISL3 family transposase -
  QFE45_RS00055 (QFE45_00055) - 11936..12799 (-) 864 WP_044004258.1 NAD(P)-dependent oxidoreductase -
  QFE45_RS00060 (QFE45_00060) - 12947..13960 (+) 1014 WP_044004260.1 glycosyltransferase -
  QFE45_RS00065 (QFE45_00065) - 14188..14970 (+) 783 WP_348651685.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20253.82 Da        Isoelectric Point: 4.4463

>NTDB_id=823406 QFE45_RS00040 WP_003708930.1 9545..10096(+) (ssb) [Ligilactobacillus salivarius strain ZSA5]
MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQQNNSFGGNTPSNNGA
DNSADPFADNGQSIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=823406 QFE45_RS00040 WP_003708930.1 9545..10096(+) (ssb) [Ligilactobacillus salivarius strain ZSA5]
GTGATTAATAGAGCTATTCTAGTAGGTCGTTTAACAAGAGATCCTGATTTACGTTACACGGCTTCTGGAGCTGCGGTTGC
TACATTTACTGTTGCTGTAAATCGTCAATTTACTAACCAACAAGGTGAACGTGAAGCTGATTTTATTAACTGTGTAATGT
GGCGTAAACCAGCAGAAAATTTTGCCAACTTTACTCATAAGGGTTCATTGGTTGGGATTGACGGACGAATTCAAACTCGT
TCTTATGAAAACCAACAAGGAACAAGAGTATATGTTACAGAAGTTGTAGCTGAGAATTTCTCATTGTTGGAATCACGTGC
CGAAGCAGATCGTTATCGTGAACAACATGGAATGACACAAAATAATTACGGAAATAATGCTCCTTCGCAAAATCAAGCAT
CACAGTTTGATAGCAATCCATTTGGTGATTCTCAACAAAATAATAGTTTTGGTGGAAATACACCATCAAATAATGGAGCA
GATAATAGTGCTGATCCATTTGCTGATAATGGACAATCTATTGATATTTCTGATGATGACTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.574

100

0.656
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.831

100

0.568