Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   R6I08_RS03865 Genome accession   NZ_CP137696
Coordinates   784954..786174 (-) Length   406 a.a.
NCBI ID   WP_001735713.1    Uniprot ID   -
Organism   Escherichia coli isolate FELIX_MS533     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 779954..791174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I08_RS03815 (R6I08_03815) - 780518..780713 (+) 196 Protein_748 DUF905 family protein -
  R6I08_RS03820 (R6I08_03820) - 780831..781649 (+) 819 WP_074481115.1 DUF932 domain-containing protein -
  R6I08_RS03825 (R6I08_03825) - 781704..782189 (+) 486 WP_001735709.1 antirestriction protein -
  R6I08_RS03830 (R6I08_03830) radC 782205..782681 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  R6I08_RS03835 (R6I08_03835) - 782750..782971 (+) 222 WP_001735710.1 DUF987 domain-containing protein -
  R6I08_RS03840 (R6I08_03840) - 783134..783502 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  R6I08_RS03845 (R6I08_03845) - 783592..783966 (+) 375 WP_000854765.1 TA system toxin CbtA family protein -
  R6I08_RS03850 (R6I08_03850) - 784020..784399 (+) 380 Protein_755 DUF5983 family protein -
  R6I08_RS03855 (R6I08_03855) - 784416..784592 (+) 177 WP_000839288.1 DUF957 domain-containing protein -
  R6I08_RS03860 (R6I08_03860) - 784698..784928 (+) 231 Protein_757 hypothetical protein -
  R6I08_RS03865 (R6I08_03865) kpsS 784954..786174 (-) 1221 WP_001735713.1 capsule biosynthesis protein Regulator
  R6I08_RS03870 (R6I08_03870) - 787338..789485 (-) 2148 WP_097496587.1 capsular polysaccharide biosynthesis protein -
  R6I08_RS03875 (R6I08_03875) rfbC 789535..790086 (-) 552 WP_021526989.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  R6I08_RS03880 (R6I08_03880) rfbA 790153..791031 (-) 879 WP_001556223.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48421.92 Da        Isoelectric Point: 10.1710

>NTDB_id=823152 R6I08_RS03865 WP_001735713.1 784954..786174(-) (kpsS) [Escherichia coli isolate FELIX_MS533]
MKNNALSILLSGKKYLLLQGPMGPFFNDIAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSAM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=823152 R6I08_RS03865 WP_001735713.1 784954..786174(-) (kpsS) [Escherichia coli isolate FELIX_MS533]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATATTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGGCGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ACGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382