Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R6I08_RS03830 Genome accession   NZ_CP137696
Coordinates   782205..782681 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli isolate FELIX_MS533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 777205..787681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I08_RS03810 (R6I08_03810) - 777601..780447 (+) 2847 WP_167779548.1 Ag43/Cah family autotransporter adhesin -
  R6I08_RS03815 (R6I08_03815) - 780518..780713 (+) 196 Protein_748 DUF905 family protein -
  R6I08_RS03820 (R6I08_03820) - 780831..781649 (+) 819 WP_074481115.1 DUF932 domain-containing protein -
  R6I08_RS03825 (R6I08_03825) - 781704..782189 (+) 486 WP_001735709.1 antirestriction protein -
  R6I08_RS03830 (R6I08_03830) radC 782205..782681 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  R6I08_RS03835 (R6I08_03835) - 782750..782971 (+) 222 WP_001735710.1 DUF987 domain-containing protein -
  R6I08_RS03840 (R6I08_03840) - 783134..783502 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  R6I08_RS03845 (R6I08_03845) - 783592..783966 (+) 375 WP_000854765.1 TA system toxin CbtA family protein -
  R6I08_RS03850 (R6I08_03850) - 784020..784399 (+) 380 Protein_755 DUF5983 family protein -
  R6I08_RS03855 (R6I08_03855) - 784416..784592 (+) 177 WP_000839288.1 DUF957 domain-containing protein -
  R6I08_RS03860 (R6I08_03860) - 784698..784928 (+) 231 Protein_757 hypothetical protein -
  R6I08_RS03865 (R6I08_03865) kpsS 784954..786174 (-) 1221 WP_001735713.1 capsule biosynthesis protein Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=823151 R6I08_RS03830 WP_001186725.1 782205..782681(+) (radC) [Escherichia coli isolate FELIX_MS533]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=823151 R6I08_RS03830 WP_001186725.1 782205..782681(+) (radC) [Escherichia coli isolate FELIX_MS533]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGCCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399