Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QHG52_RS01670 Genome accession   NZ_CP123912
Coordinates   362390..362920 (+) Length   176 a.a.
NCBI ID   WP_005034344.1    Uniprot ID   A0A0A8TMR9
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357390..367920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG52_RS01655 comM 359945..361003 (+) 1059 WP_005034346.1 pilus assembly protein PilM Machinery gene
  QHG52_RS01660 pilN 361003..361644 (+) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  QHG52_RS01665 comO 361641..362393 (+) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  QHG52_RS01670 comL 362390..362920 (+) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  QHG52_RS01675 pilQ 362941..365112 (+) 2172 WP_005034341.1 type IV pilus secretin PilQ Machinery gene
  QHG52_RS01680 aroK 365149..365691 (+) 543 WP_004825383.1 shikimate kinase AroK -
  QHG52_RS01685 aroB 365728..366807 (+) 1080 WP_005034338.1 3-dehydroquinate synthase -
  QHG52_RS01690 - 366826..367695 (+) 870 WP_005034336.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19462.49 Da        Isoelectric Point: 7.8147

>NTDB_id=823059 QHG52_RS01670 WP_005034344.1 362390..362920(+) (comL) [Acinetobacter bereziniae strain UCO-553]
MKKHNKIICGISFTLLLVGCDSRIDAVNQEMANIRSQTPLPIEPAPVFNPVPSFNYSAQQLRSPFLPSSLANELKVMSGK
RVYPNFSRQPQPLESYPLESLTLKGSMKGNAGQTVGLIQTPDGEIERVQLGNYMGMNQGRIIEITPTRIDLLEIVPDGRD
GYIERPRSLVLIGPVD

Nucleotide


Download         Length: 531 bp        

>NTDB_id=823059 QHG52_RS01670 WP_005034344.1 362390..362920(+) (comL) [Acinetobacter bereziniae strain UCO-553]
ATGAAAAAACACAATAAAATAATCTGTGGAATCTCATTCACTTTGTTGTTGGTTGGTTGTGACTCTAGGATTGATGCCGT
CAATCAGGAAATGGCAAATATTCGTAGTCAAACACCTTTGCCGATTGAACCAGCACCTGTATTTAATCCTGTGCCAAGTT
TTAATTATTCTGCACAACAATTGCGTAGTCCATTCTTACCAAGTTCGTTGGCAAATGAATTAAAGGTGATGTCAGGAAAA
CGAGTGTATCCGAATTTCTCTAGACAACCGCAGCCACTTGAAAGTTATCCTTTAGAGTCGTTGACACTGAAAGGAAGTAT
GAAGGGCAATGCAGGACAAACGGTAGGATTAATCCAAACACCAGATGGTGAAATTGAACGTGTTCAACTGGGCAATTACA
TGGGGATGAATCAGGGTCGAATTATTGAAATTACACCGACCCGTATTGATTTATTGGAAATTGTTCCAGATGGTCGAGAC
GGTTATATCGAAAGACCACGCAGTCTAGTTCTAATTGGTCCAGTGGATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TMR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Acinetobacter baylyi ADP1

74.269

97.159

0.722
  pilP Acinetobacter baumannii D1279779

72.832

98.295

0.716