Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QHG52_RS01660 Genome accession   NZ_CP123912
Coordinates   361003..361644 (+) Length   213 a.a.
NCBI ID   WP_004825390.1    Uniprot ID   A0A0A8TMP8
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356003..366644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG52_RS01645 - 356378..357181 (+) 804 WP_005034349.1 putative RNA methyltransferase -
  QHG52_RS01650 ponA 357241..359781 (-) 2541 WP_005034348.1 penicillin-binding protein PBP1a -
  QHG52_RS01655 comM 359945..361003 (+) 1059 WP_005034346.1 pilus assembly protein PilM Machinery gene
  QHG52_RS01660 pilN 361003..361644 (+) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  QHG52_RS01665 comO 361641..362393 (+) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  QHG52_RS01670 comL 362390..362920 (+) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  QHG52_RS01675 pilQ 362941..365112 (+) 2172 WP_005034341.1 type IV pilus secretin PilQ Machinery gene
  QHG52_RS01680 aroK 365149..365691 (+) 543 WP_004825383.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23811.29 Da        Isoelectric Point: 5.1466

>NTDB_id=823057 QHG52_RS01660 WP_004825390.1 361003..361644(+) (pilN) [Acinetobacter bereziniae strain UCO-553]
MAKINLLPWRDELREQKKKQFVAICVGVALIGLATVLLAWFYFDHKLEDQEQANQLVTSTNQNLDMQLKTLDGLQERRNA
IIERMKLIQGLQGQRPVIVRLVDELVRVVPAQMYITKFSRVGDKFTIEGKAESPNTVAELLRGLEASEWYRNAFMNSFLA
AEENKNQAQTSVIPRVEESYGSFVVTVDLGEIASVADDSATKAEQVPAAGGAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=823057 QHG52_RS01660 WP_004825390.1 361003..361644(+) (pilN) [Acinetobacter bereziniae strain UCO-553]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGACGAGCTAAGAGAACAGAAAAAGAAACAATTTGTGGCAATCTGTGTGGG
TGTTGCATTGATTGGATTGGCAACTGTGTTATTGGCATGGTTTTATTTTGATCATAAGCTTGAAGATCAAGAGCAGGCCA
ATCAGTTGGTAACCAGTACCAATCAAAACTTAGATATGCAATTAAAAACTTTAGATGGATTGCAAGAGCGTCGTAATGCC
ATTATTGAGCGAATGAAGTTGATTCAAGGTTTACAAGGACAACGTCCTGTGATTGTTCGCTTGGTTGATGAATTGGTTCG
TGTCGTTCCAGCACAAATGTACATCACGAAATTCAGTCGTGTTGGGGATAAATTTACCATCGAAGGTAAAGCTGAAAGTC
CGAATACCGTTGCTGAATTATTGCGTGGTTTGGAAGCTTCTGAGTGGTATAGAAATGCCTTTATGAATTCATTCCTAGCC
GCAGAAGAAAATAAAAATCAAGCACAAACATCCGTGATTCCTCGAGTAGAAGAGTCTTATGGAAGCTTTGTGGTCACTGT
AGATTTAGGGGAAATCGCTTCTGTAGCAGATGATAGTGCAACAAAGGCTGAACAAGTTCCAGCTGCTGGGGGTGCGAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TMP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

72.77

100

0.728
  comN Acinetobacter baylyi ADP1

68.075

100

0.681