Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   R8586_RS02530 Genome accession   NZ_AP026922
Coordinates   491639..492688 (+) Length   349 a.a.
NCBI ID   WP_000653751.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700038     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 486639..497688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8586_RS02500 (PC0038_04900) - 487691..488044 (+) 354 WP_000115729.1 hypothetical protein -
  R8586_RS02505 (PC0038_04910) dnaJ 488249..489385 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  R8586_RS02510 (PC0038_04920) - 489735..489974 (-) 240 WP_001813906.1 hypothetical protein -
  R8586_RS02515 (PC0038_04930) - 490136..490423 (-) 288 WP_000777753.1 hypothetical protein -
  R8586_RS02520 (PC0038_04940) - 490433..490843 (-) 411 WP_001278304.1 HIT family protein -
  R8586_RS02525 (PC0038_04950) pptA 490911..491642 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R8586_RS02530 (PC0038_04960) pptB 491639..492688 (+) 1050 WP_000653751.1 ABC transporter permease Regulator
  R8586_RS02535 (PC0038_04970) - 492856..493185 (-) 330 WP_000132572.1 hypothetical protein -
  R8586_RS02540 (PC0038_04980) - 493462..493800 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  R8586_RS02545 (PC0038_04990) comE/blpR 493805..494542 (+) 738 WP_001219141.1 response regulator transcription factor Regulator
  R8586_RS02550 (PC0038_05000) - 494556..495896 (+) 1341 WP_001099892.1 sensor histidine kinase -
  R8586_RS02555 (PC0038_05010) blpC 495940..496095 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -
  R8586_RS02560 (PC0038_05020) - 496152..497513 (-) 1362 WP_001069071.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40544.67 Da        Isoelectric Point: 10.0027

>NTDB_id=82286 R8586_RS02530 WP_000653751.1 491639..492688(+) (pptB) [Streptococcus pneumoniae strain PZ900700038]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEAIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=82286 R8586_RS02530 WP_000653751.1 491639..492688(+) (pptB) [Streptococcus pneumoniae strain PZ900700038]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTCTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGCAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTATATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTTACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTATTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467


Multiple sequence alignment