Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   R6Y88_RS11330 Genome accession   NZ_CP137687
Coordinates   2220052..2220846 (+) Length   264 a.a.
NCBI ID   WP_015483958.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2215052..2225846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS11310 walR 2215294..2216001 (+) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -
  R6Y88_RS11315 walK 2216009..2217844 (+) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  R6Y88_RS11320 walH 2217834..2219201 (+) 1368 WP_041518280.1 WalRK two-component regulatory system regulator WalH -
  R6Y88_RS11325 walI 2219188..2220030 (+) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  R6Y88_RS11330 vicX 2220052..2220846 (+) 795 WP_015483958.1 MBL fold metallo-hydrolase Regulator
  R6Y88_RS11335 htrA 2220928..2222130 (+) 1203 WP_021481077.1 serine protease HtrC Regulator
  R6Y88_RS11340 - 2222150..2222276 (+) 127 Protein_2177 hypothetical protein -
  R6Y88_RS11345 - 2222389..2222577 (+) 189 Protein_2178 ATP-binding protein -
  R6Y88_RS11350 rocR 2222559..2223944 (-) 1386 WP_015385164.1 arginine utilization regulatory protein RocR -
  R6Y88_RS11355 rocD 2224185..2225390 (+) 1206 WP_015483955.1 ornithine aminotransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29282.29 Da        Isoelectric Point: 6.0287

>NTDB_id=822808 R6Y88_RS11330 WP_015483958.1 2220052..2220846(+) (vicX) [Bacillus subtilis strain YT-4]
MSLQFSVLASGSTGNAFYLETENHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=822808 R6Y88_RS11330 WP_015483958.1 2220052..2220846(+) (vicX) [Bacillus subtilis strain YT-4]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGAATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAATAACATGAAGGAGCTGGCAAGAATGTCCGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACAGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53