Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NUG19_RS07370 Genome accession   NZ_CP123853
Coordinates   1479171..1479740 (-) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474171..1484740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUG19_RS07330 - 1474645..1475253 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  NUG19_RS07335 rplL 1475428..1475796 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NUG19_RS07340 rplJ 1475839..1476339 (-) 501 WP_042727573.1 50S ribosomal protein L10 -
  NUG19_RS07345 rplA 1476611..1477303 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  NUG19_RS07350 rplK 1477511..1477933 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  NUG19_RS07355 nusG 1478114..1478662 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NUG19_RS07360 secE 1478675..1478857 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NUG19_RS07365 rpmG 1478913..1479056 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  NUG19_RS07370 sigH 1479171..1479740 (-) 570 WP_000872874.1 RNA polymerase sigma factor Regulator
  NUG19_RS07375 - 1479821..1480345 (-) 525 WP_000664738.1 NYN domain-containing protein -
  NUG19_RS07380 rlmB 1480345..1481091 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NUG19_RS07385 - 1481099..1481503 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NUG19_RS07390 cysS 1481496..1482896 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  NUG19_RS07395 cysE 1482880..1483527 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=822807 NUG19_RS07370 WP_000872874.1 1479171..1479740(-) (sigH) [Staphylococcus aureus strain FDA209P]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=822807 NUG19_RS07370 WP_000872874.1 1479171..1479740(-) (sigH) [Staphylococcus aureus strain FDA209P]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984