Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NUG19_RS02150 Genome accession   NZ_CP123853
Coordinates   401268..401954 (+) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396268..406954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUG19_RS02115 yqeH 396795..397895 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  NUG19_RS02120 aroE 397909..398715 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  NUG19_RS02125 yhbY 398719..399009 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NUG19_RS02130 nadD 399012..399581 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NUG19_RS02135 yqeK 399571..400155 (+) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NUG19_RS02140 rsfS 400156..400509 (+) 354 WP_042727695.1 ribosome silencing factor -
  NUG19_RS02145 - 400512..401228 (+) 717 WP_151368995.1 class I SAM-dependent methyltransferase -
  NUG19_RS02150 comEA 401268..401954 (+) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  NUG19_RS02155 - 402046..402507 (+) 462 WP_000439693.1 ComE operon protein 2 -
  NUG19_RS02160 comEC 402512..404713 (+) 2202 WP_001815444.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NUG19_RS02165 holA 404770..405744 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  NUG19_RS02170 rpsT 405789..406040 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=822787 NUG19_RS02150 WP_072353822.1 401268..401954(+) (comEA) [Staphylococcus aureus strain FDA209P]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=822787 NUG19_RS02150 WP_072353822.1 401268..401954(+) (comEA) [Staphylococcus aureus strain FDA209P]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978