Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NRK31_RS13135 Genome accession   NZ_CP123852
Coordinates   2663231..2663626 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 5812R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2658231..2668626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK31_RS13105 - 2659488..2659892 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  NRK31_RS13110 - 2660231..2660323 (+) 93 WP_001790611.1 hypothetical protein -
  NRK31_RS13115 - 2660455..2660688 (+) 234 WP_000384523.1 DUF1146 family protein -
  NRK31_RS13120 murA 2660799..2662064 (+) 1266 WP_042727551.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NRK31_RS13125 fabZ 2662098..2662538 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NRK31_RS13130 - 2662597..2663037 (-) 441 WP_000846746.1 YwpF-like family protein -
  NRK31_RS13135 ssb 2663231..2663626 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NRK31_RS13140 sceD 2664015..2664710 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  NRK31_RS13145 tenA 2665235..2665924 (+) 690 WP_000396074.1 thiaminase II -
  NRK31_RS13150 thiD 2665917..2666747 (+) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NRK31_RS13155 thiM 2666731..2667522 (+) 792 WP_001108478.1 hydroxyethylthiazole kinase -
  NRK31_RS13160 thiE 2667524..2668165 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=822775 NRK31_RS13135 WP_000932694.1 2663231..2663626(+) (ssb) [Staphylococcus aureus strain 5812R]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=822775 NRK31_RS13135 WP_000932694.1 2663231..2663626(+) (ssb) [Staphylococcus aureus strain 5812R]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992