Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R6Y88_RS05835 Genome accession   NZ_CP137687
Coordinates   1173880..1174527 (-) Length   215 a.a.
NCBI ID   WP_015383201.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168880..1179527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS05805 - 1168920..1170272 (-) 1353 WP_015483356.1 IS1182 family transposase -
  R6Y88_RS05810 nsrR 1170477..1170917 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  R6Y88_RS05815 lytF 1171070..1172536 (+) 1467 WP_015483006.1 peptidoglycan endopeptidase LytF -
  R6Y88_RS05820 yhdC 1172578..1172901 (-) 324 WP_014476269.1 YqzG/YhdC family protein -
  R6Y88_RS05825 yhdB 1173102..1173344 (+) 243 WP_015483005.1 YhdB family protein -
  R6Y88_RS05830 yhdA 1173359..1173883 (-) 525 WP_015483004.1 FMN-dependent NADPH-azoreductase -
  R6Y88_RS05835 vraR 1173880..1174527 (-) 648 WP_015383201.1 two-component system response regulator YhcZ Regulator
  R6Y88_RS05840 yhcY 1174524..1175663 (-) 1140 WP_015483003.1 two-component system sensor histidine kinase YhcY -
  R6Y88_RS05845 pgcA 1175812..1177557 (-) 1746 WP_015383199.1 phosphoglucomutase -
  R6Y88_RS05850 glpD 1177687..1179354 (-) 1668 WP_015383198.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24191.86 Da        Isoelectric Point: 6.5033

>NTDB_id=822773 R6Y88_RS05835 WP_015383201.1 1173880..1174527(-) (vraR) [Bacillus subtilis strain YT-4]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALRAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=822773 R6Y88_RS05835 WP_015383201.1 1173880..1174527(-) (vraR) [Bacillus subtilis strain YT-4]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACCGGATTAGAAGCACTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTCCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCGGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCTGATCGTACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4