Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NRK31_RS07370 Genome accession   NZ_CP123852
Coordinates   1479170..1479739 (-) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 5812R     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474170..1484739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK31_RS07330 - 1474644..1475252 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  NRK31_RS07335 rplL 1475427..1475795 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NRK31_RS07340 rplJ 1475838..1476338 (-) 501 WP_042727573.1 50S ribosomal protein L10 -
  NRK31_RS07345 rplA 1476610..1477302 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  NRK31_RS07350 rplK 1477510..1477932 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  NRK31_RS07355 nusG 1478113..1478661 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NRK31_RS07360 secE 1478674..1478856 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NRK31_RS07365 rpmG 1478912..1479055 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  NRK31_RS07370 sigH 1479170..1479739 (-) 570 WP_000872874.1 RNA polymerase sigma factor Regulator
  NRK31_RS07375 - 1479820..1480344 (-) 525 WP_000664738.1 NYN domain-containing protein -
  NRK31_RS07380 rlmB 1480344..1481090 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NRK31_RS07385 - 1481098..1481502 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NRK31_RS07390 cysS 1481495..1482895 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  NRK31_RS07395 cysE 1482879..1483526 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=822765 NRK31_RS07370 WP_000872874.1 1479170..1479739(-) (sigH) [Staphylococcus aureus strain 5812R]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=822765 NRK31_RS07370 WP_000872874.1 1479170..1479739(-) (sigH) [Staphylococcus aureus strain 5812R]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984