Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NRK31_RS05320 Genome accession   NZ_CP123852
Coordinates   1069679..1070665 (-) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 5812R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1064679..1075665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK31_RS05295 - 1064939..1065286 (-) 348 WP_001242102.1 hypothetical protein -
  NRK31_RS05300 - 1065472..1066065 (+) 594 WP_000224612.1 CYTH domain-containing protein -
  NRK31_RS05305 - 1066169..1066534 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NRK31_RS05310 yjbH 1066557..1067363 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  NRK31_RS05315 pepF 1067823..1069631 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  NRK31_RS05320 coiA 1069679..1070665 (-) 987 WP_000959292.1 competence protein CoiA family protein Machinery gene
  NRK31_RS05325 mecA 1070786..1071505 (-) 720 WP_001217728.1 adaptor protein MecA -
  NRK31_RS05330 spxA 1071876..1072271 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  NRK31_RS05335 trpS 1072566..1073555 (+) 990 WP_000448943.1 tryptophan--tRNA ligase -
  NRK31_RS05340 opp4C 1073597..1074478 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  NRK31_RS05345 opp4B 1074490..1075452 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=822760 NRK31_RS05320 WP_000959292.1 1069679..1070665(-) (coiA) [Staphylococcus aureus strain 5812R]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=822760 NRK31_RS05320 WP_000959292.1 1069679..1070665(-) (coiA) [Staphylococcus aureus strain 5812R]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976