Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R6U80_RS06370 Genome accession   NZ_CP137623
Coordinates   1297480..1298535 (-) Length   351 a.a.
NCBI ID   WP_313792044.1    Uniprot ID   -
Organism   Lactococcus lactis strain NCK401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292480..1303535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS06355 (R6U80_06355) trmFO 1294169..1295512 (+) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  R6U80_RS06360 (R6U80_06360) xerS 1295557..1296627 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  R6U80_RS06365 (R6U80_06365) - 1297110..1297397 (-) 288 WP_015426413.1 hypothetical protein -
  R6U80_RS06370 (R6U80_06370) xerS 1297480..1298535 (-) 1056 WP_313792044.1 tyrosine recombinase XerS Machinery gene
  R6U80_RS06375 (R6U80_06375) - 1299437..1300375 (-) 939 WP_313792043.1 N(5)-(carboxyethyl)ornithine synthase -
  R6U80_RS06380 (R6U80_06380) - 1300414..1301364 (-) 951 WP_148669248.1 CorA family divalent cation transporter -
  R6U80_RS06385 (R6U80_06385) - 1301489..1302040 (-) 552 WP_098383877.1 Asp23/Gls24 family envelope stress response protein -
  R6U80_RS06390 (R6U80_06390) - 1302061..1302249 (-) 189 WP_015425997.1 DUF2273 domain-containing protein -
  R6U80_RS06395 (R6U80_06395) amaP 1302259..1302819 (-) 561 WP_011835141.1 alkaline shock response membrane anchor protein AmaP -
  R6U80_RS06400 (R6U80_06400) - 1302849..1303088 (-) 240 WP_313792042.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40560.27 Da        Isoelectric Point: 9.6865

>NTDB_id=822669 R6U80_RS06370 WP_313792044.1 1297480..1298535(-) (xerS) [Lactococcus lactis strain NCK401]
MSENHGYRYNVNKLMLEFPYFVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITSHASIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDNNGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKTFLEFVEQDYEKSVSNRAKTSFKKNKKRDLAILSFFLSSGLRCAELVGINLNDLNLETGKVSVMRKEGKKDVVP
IAHFSHKYITDYFDARSSLNTDVEALFITDYNQTIRKISNASINKMVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=822669 R6U80_RS06370 WP_313792044.1 1297480..1298535(-) (xerS) [Lactococcus lactis strain NCK401]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTTCGTCAATGAGTTTATCCA
GTCTAAGGACACTGTACCGCTTAGTATTGCCTCTATTTACTCTTACTGCTTAGAATTTAGAAAATACTTGAAATGGATGA
ATGAAAACAACATAACGAGCCATGCTAGCATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCATTAAATCGAAC
AATTGCTGCAATAAAGAGCCTATATAATTATCTTTGCGAACAAACCGAAGATAATAATGGCAATACTTACATGACTAGAA
ATGTAAGTCGCTTAATTCATATCCGAAAAAAAAGTGAAACCCTGCATTACCGAGCAGCTCAACTTGAAGGGAAACTCTTT
TTAGGTGATGAAACCAAAACCTTTTTAGAATTTGTTGAGCAGGACTATGAAAAGTCTGTCAGTAACCGTGCGAAAACAAG
TTTCAAAAAAAATAAAAAAAGAGATTTAGCCATACTAAGCTTCTTTTTATCTTCTGGATTACGCTGTGCGGAACTTGTAG
GGATCAATCTCAATGATTTAAACCTTGAAACTGGAAAAGTAAGTGTGATGCGAAAAGAAGGCAAGAAAGATGTAGTACCT
ATTGCTCATTTTTCGCATAAGTATATAACAGATTATTTTGATGCAAGAAGTAGCTTAAATACTGATGTAGAAGCCTTATT
TATCACGGACTATAACCAAACAATCAGAAAAATTTCTAATGCATCGATAAATAAAATGGTTGCAAAGTATTCAGAAGCCT
ACAAAGTGAGAGTAACCCCTCATACTCTAAGGCATACATTCGCAACAAGACTTTATAATGTCAGTCACTCTCAGGTTCTT
GTCAGCAACCAATTAGGGCATTCATCAACTAAGCCTACTGAGTTATATACCCACATTGTCAGTGCTGAAGCTAAGGATGC
GTTAAGAAAGTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(185-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.143

99.715

0.45