Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R6U80_RS06360 Genome accession   NZ_CP137623
Coordinates   1295557..1296627 (-) Length   356 a.a.
NCBI ID   WP_003131037.1    Uniprot ID   Q9CG78
Organism   Lactococcus lactis strain NCK401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1290557..1301627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS06345 (R6U80_06345) dprA 1290855..1291703 (+) 849 WP_012897825.1 DNA-processing protein DprA Machinery gene
  R6U80_RS06350 (R6U80_06350) topA 1291965..1294097 (+) 2133 WP_313792045.1 type I DNA topoisomerase -
  R6U80_RS06355 (R6U80_06355) trmFO 1294169..1295512 (+) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  R6U80_RS06360 (R6U80_06360) xerS 1295557..1296627 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  R6U80_RS06365 (R6U80_06365) - 1297110..1297397 (-) 288 WP_015426413.1 hypothetical protein -
  R6U80_RS06370 (R6U80_06370) xerS 1297480..1298535 (-) 1056 WP_313792044.1 tyrosine recombinase XerS Machinery gene
  R6U80_RS06375 (R6U80_06375) - 1299437..1300375 (-) 939 WP_313792043.1 N(5)-(carboxyethyl)ornithine synthase -
  R6U80_RS06380 (R6U80_06380) - 1300414..1301364 (-) 951 WP_148669248.1 CorA family divalent cation transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41397.21 Da        Isoelectric Point: 9.6568

>NTDB_id=822668 R6U80_RS06360 WP_003131037.1 1295557..1296627(-) (xerS) [Lactococcus lactis strain NCK401]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=822668 R6U80_RS06360 WP_003131037.1 1295557..1296627(-) (xerS) [Lactococcus lactis strain NCK401]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGTAATCAGTTAGGGCACGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAGCAAAAAAATGCTTTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CG78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.685

100

0.767