Detailed information NTG0822662

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QCD61_RS23640
• Genome accession: NZ_CP123771
• Coordinates: 5408126..5409472 (+)
• Length: 448 a.a.
• NCBI ID: WP_135847229.1
• Uniprot ID: -
• Organism: Pseudomonas viciae strain YsS1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5403126..5414472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCD61_RS23615 (QCD61_23615)	pgeF	5403339..5404064 (-)	726	WP_265072389.1	peptidoglycan editing factor PgeF	-
QCD61_RS23620 (QCD61_23620)	rluD	5404061..5405023 (-)	963	WP_003205696.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QCD61_RS23625 (QCD61_23625)	-	5405175..5406191 (+)	1017	WP_265072390.1	outer membrane protein assembly factor BamD	-
QCD61_RS23630 (QCD61_23630)	-	5406317..5406550 (+)	234	WP_135847227.1	PP0621 family protein	-
QCD61_RS23635 (QCD61_23635)	pilS	5406540..5408129 (+)	1590	WP_135847228.1	ATP-binding protein	Regulator
QCD61_RS23640 (QCD61_23640)	pilR	5408126..5409472 (+)	1347	WP_135847229.1	sigma-54 dependent transcriptional regulator	Regulator
QCD61_RS23645 (QCD61_23645)	-	5409558..5409923 (-)	366	WP_135847230.1	DUF6124 family protein	-
QCD61_RS23650 (QCD61_23650)	thiO	5410705..5411805 (-)	1101	WP_280944389.1	glycine oxidase ThiO	-
QCD61_RS23655 (QCD61_23655)	-	5411860..5412261 (-)	402	WP_135847232.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50108.50 Da
• Isoelectric Point: 5.5774

>NTDB_id=822662 QCD61_RS23640 WP_135847229.1 5408126..5409472(+) (pilR) [Pseudomonas viciae strain YsS1]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLTEAQALLAGETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPIATPVATIERCLLGDSPPMCSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPARLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAESSSAIDAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=822662 QCD61_RS23640 WP_135847229.1 5408126..5409472(+) (pilR) [Pseudomonas viciae strain YsS1]
TTGAATACTCGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTACCGAGGCCCAAGCCCTGCTGGCGGGCGAAACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAGCGTTACCCGCAACTCCCC
GTGGCAATGATTACGGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGCCTGCGAGAACTGGTCACCAGCGCCTTGCGCCTGCCGCCGATCGCCACGCCGGTCGCCACCA
TCGAGCGCTGCCTGCTGGGCGATTCCCCGCCGATGTGCAGCGTACGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGTGAGTCAGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCATGAACAGGGTCCCCGTTCCAA
CCAGGGGTTTGTGCCGGTCAACTGTGGGGCAATTCCCACGGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCACGGCGGGACGCTGTTTCTCGATGAAGTGGCC
GACCTGCCCTTGGCAATGCAGGTCAAACTGTTGCGAGCGATCCAGGAAAAGGCCGTGCGCGCCGTCGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCCACCCACAAGGACCTGGACGGCGAAGTGGCCGCCGGGCGCTTTCGTCAGG
ATCTGTACTATCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCTTGCGTGAGCGTCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGGCTGGCGGCCAACACCGGTAGCCCACCGGCCAGGTTGCATCCCCAGGCGTTGGACGCTCTGAG
GAACTACCGCTTCCCGGGCAACGTGCGGGAACTGGAAAATATGCTCGAACGTGCCTACACCCTTTGCGAACAGCAACAGA
TTGAAGCTGACGACCTGCGCTTGGCCGAGAGCAGTAGTGCTATCGACGCCGGCAACCCCGATTTGATGCAGGTCGACAAC
CTGGAAGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.054	99.107	0.783
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507