Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R6U80_RS00485 Genome accession   NZ_CP137623
Coordinates   92948..94207 (-) Length   419 a.a.
NCBI ID   WP_058222949.1    Uniprot ID   -
Organism   Lactococcus lactis strain NCK401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87948..99207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS00455 (R6U80_00455) - 88162..89010 (+) 849 WP_313791852.1 PRD domain-containing protein -
  R6U80_RS00460 (R6U80_00460) - 89064..89243 (-) 180 Protein_81 IS3 family transposase -
  R6U80_RS00465 (R6U80_00465) rpmG 89561..89710 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  R6U80_RS00470 (R6U80_00470) rpmF 89740..89913 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  R6U80_RS00475 (R6U80_00475) - 90277..92058 (+) 1782 WP_021722893.1 heavy metal translocating P-type ATPase -
  R6U80_RS00480 (R6U80_00480) spo0J 92108..92893 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  R6U80_RS00485 (R6U80_00485) rarA 92948..94207 (-) 1260 WP_058222949.1 replication-associated recombination protein A Machinery gene
  R6U80_RS00490 (R6U80_00490) - 94251..94739 (-) 489 WP_058213361.1 GNAT family N-acetyltransferase -
  R6U80_RS00495 (R6U80_00495) - 94892..95359 (+) 468 WP_010905112.1 DUF3013 family protein -
  R6U80_RS00500 (R6U80_00500) - 95389..96942 (+) 1554 WP_313791851.1 ABC-F family ATP-binding cassette domain-containing protein -
  R6U80_RS00505 (R6U80_00505) - 97073..97357 (+) 285 WP_010905114.1 hypothetical protein -
  R6U80_RS00510 (R6U80_00510) - 97395..97883 (+) 489 WP_098395976.1 YdeI/OmpD-associated family protein -
  R6U80_RS00515 (R6U80_00515) prmA 97901..98854 (+) 954 WP_058202929.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46782.08 Da        Isoelectric Point: 5.6008

>NTDB_id=822633 R6U80_RS00485 WP_058222949.1 92948..94207(-) (rarA) [Lactococcus lactis strain NCK401]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVD
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=822633 R6U80_RS00485 WP_058222949.1 92948..94207(-) (rarA) [Lactococcus lactis strain NCK401]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCTTTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAGAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACTATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.479

100

0.599