NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	QFB56_RS17535	Genome accession	NZ_CP123765
Coordinates	3606878..3607738 (+)	Length	286 a.a.
NCBI ID	WP_032070754.1	Uniprot ID	A0AAE9M8Y4
Organism	Acinetobacter pittii strain AP8900
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3601878..3612738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFB56_RS17515 (QFB56_17515)	secG	3602485..3602814 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
QFB56_RS17520 (QFB56_17520)	tpiA	3602827..3603621 (-)	795	WP_032063691.1	triose-phosphate isomerase	-
QFB56_RS17525 (QFB56_17525)	pilB	3603913..3605625 (+)	1713	WP_032070753.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QFB56_RS17530 (QFB56_17530)	pilC	3605652..3606878 (+)	1227	WP_126117775.1	type II secretion system F family protein	Machinery gene
QFB56_RS17535 (QFB56_17535)	pilD	3606878..3607738 (+)	861	WP_032070754.1	A24 family peptidase	Machinery gene
QFB56_RS17540 (QFB56_17540)	coaE	3607740..3608336 (+)	597	WP_032070755.1	dephospho-CoA kinase	-
QFB56_RS17545 (QFB56_17545)	-	3608333..3609247 (-)	915	WP_032070756.1	DMT family transporter	-
QFB56_RS17550 (QFB56_17550)	rlmB	3609283..3610032 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
QFB56_RS17555 (QFB56_17555)	-	3610135..3610461 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
QFB56_RS17560 (QFB56_17560)	-	3610538..3611848 (-)	1311	WP_032063688.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32128.61 Da Isoelectric Point: 6.4261

                                >NTDB_id=822633 QFB56_RS17535 WP_032070754.1 3606878..3607738(+) (pilD) [Acinetobacter pittii strain AP8900]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQILLNPELPIIEHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGDCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=822633 QFB56_RS17535 WP_032070754.1 3606878..3607738(+) (pilD) [Acinetobacter pittii strain AP8900]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG

TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATATTGCTTA

ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCGATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA

TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT

TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG

ATATTTAATCGGTTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437

Detailed information NTG0822633