Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   QFB56_RS10795 Genome accession   NZ_CP123765
Coordinates   2197799..2198179 (-) Length   126 a.a.
NCBI ID   WP_032057019.1    Uniprot ID   A0A009RST6
Organism   Acinetobacter pittii strain AP8900     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2192799..2203179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS10765 (QFB56_10765) tadA 2192863..2193366 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  QFB56_RS10770 (QFB56_10770) hibch 2193372..2194496 (-) 1125 WP_016803061.1 enoyl-CoA hydratase/isomerase family protein -
  QFB56_RS10775 (QFB56_10775) ung 2194493..2195206 (-) 714 WP_002121342.1 uracil-DNA glycosylase -
  QFB56_RS10780 (QFB56_10780) - 2195260..2195856 (-) 597 WP_002121363.1 6-carboxytetrahydropterin synthase -
  QFB56_RS10785 (QFB56_10785) gspK 2196084..2197043 (-) 960 WP_005076277.1 type II secretion system minor pseudopilin GspK -
  QFB56_RS10790 (QFB56_10790) xcpW 2197044..2197799 (-) 756 WP_032057017.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QFB56_RS10795 (QFB56_10795) xcpV 2197799..2198179 (-) 381 WP_032057019.1 type II secretion system minor pseudopilin GspI Machinery gene
  QFB56_RS10800 (QFB56_10800) - 2198169..2198723 (-) 555 WP_005069534.1 type II secretion system protein -
  QFB56_RS10805 (QFB56_10805) - 2198730..2199338 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  QFB56_RS10810 (QFB56_10810) ycfH 2199375..2200148 (-) 774 WP_017399499.1 TatD family hydrolase -
  QFB56_RS10815 (QFB56_10815) pilZ 2200166..2200507 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  QFB56_RS10820 (QFB56_10820) holB 2200518..2201498 (-) 981 WP_032057020.1 DNA polymerase III subunit delta' -
  QFB56_RS10825 (QFB56_10825) kdsB 2201512..2202273 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13902.03 Da        Isoelectric Point: 9.4463

>NTDB_id=822617 QFB56_RS10795 WP_032057019.1 2197799..2198179(-) (xcpV) [Acinetobacter pittii strain AP8900]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDVQVSLYDSDKGKVQNGITHLVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=822617 QFB56_RS10795 WP_032057019.1 2197799..2198179(-) (xcpV) [Acinetobacter pittii strain AP8900]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAGTTG
CTTTAATGGAAATAAATCAGGAATGGCTCGAAGGTACACAAAGCAAGCAAGTGACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCTGCGCAATCTACAATTAGTCCAAATGTTCAAAAAGTAGATGTACAAGTTAGTTTATATGATTCTGATAAGGG
GAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTACCCCGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RST6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

95.238

100

0.952