Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   QFX18_RS02485 Genome accession   NZ_CP123764
Coordinates   570852..571247 (+) Length   131 a.a.
NCBI ID   WP_011470104.1    Uniprot ID   Q21EJ0
Organism   Saccharophagus degradans strain FZY0027     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 565852..576247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX18_RS02460 (QFX18_02460) pilU 566384..567526 (+) 1143 WP_011470109.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QFX18_RS02465 (QFX18_02465) ruvX 567550..567978 (-) 429 WP_011470108.1 Holliday junction resolvase RuvX -
  QFX18_RS02470 (QFX18_02470) - 568034..568645 (-) 612 WP_216063508.1 YqgE/AlgH family protein -
  QFX18_RS02475 (QFX18_02475) - 568734..569618 (-) 885 WP_280947022.1 energy transducer TonB -
  QFX18_RS02480 (QFX18_02480) gshB 569638..570591 (-) 954 WP_280947023.1 glutathione synthase -
  QFX18_RS02485 (QFX18_02485) pilG 570852..571247 (+) 396 WP_011470104.1 twitching motility response regulator PilG Regulator
  QFX18_RS02490 (QFX18_02490) pilH 571301..571663 (+) 363 WP_216063506.1 twitching motility response regulator PilH -
  QFX18_RS02495 (QFX18_02495) - 571714..572253 (+) 540 WP_216063505.1 chemotaxis protein CheW -
  QFX18_RS02500 (QFX18_02500) - 572404..574599 (+) 2196 WP_216063504.1 methyl-accepting chemotaxis protein -
  QFX18_RS02505 (QFX18_02505) - 574624..575472 (+) 849 WP_011470100.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14331.71 Da        Isoelectric Point: 8.4980

>NTDB_id=822576 QFX18_RS02485 WP_011470104.1 570852..571247(+) (pilG) [Saccharophagus degradans strain FZY0027]
MDANLEHLKVMVIDDSKTIRRTAETLLKKVGCTVVTATDGFDALAKIADTRPDIIFVDIMMPRLDGYQTCALIKNNSEFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKGELIGAIEAHVKVARAS

Nucleotide


Download         Length: 396 bp        

>NTDB_id=822576 QFX18_RS02485 WP_011470104.1 570852..571247(+) (pilG) [Saccharophagus degradans strain FZY0027]
ATGGACGCGAATCTAGAACACCTAAAAGTGATGGTGATCGACGATAGTAAAACCATCCGCCGTACCGCCGAAACTTTGTT
AAAAAAAGTTGGCTGTACAGTAGTCACTGCCACAGATGGCTTTGACGCATTAGCAAAAATTGCTGATACTCGCCCAGATA
TTATTTTTGTGGACATTATGATGCCTCGCCTAGACGGATATCAAACTTGCGCACTCATCAAAAATAATAGCGAATTTAAA
TCTACCCCTGTCATCATGTTATCCAGCAAGGACGGCTTGTTCGACAAGGCCAAGGGGCGGATAGTTGGCTCAGATCAATA
CCTTACTAAGCCTTTTAGTAAAGGGGAATTGATCGGTGCAATTGAGGCGCATGTTAAGGTTGCTCGCGCGAGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q21EJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.6

95.42

0.702
  vicR Streptococcus mutans UA159

41.525

90.076

0.374