Detailed information NTG0822569

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: R6U48_RS10015
• Genome accession: NZ_CP137562
• Coordinates: 2128445..2129317 (-)
• Length: 290 a.a.
• NCBI ID: WP_003107301.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain CPA0087
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2123445..2134317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R6U48_RS09970 (R6U48_09970)	-	2124306..2124476 (-)	171	WP_003094672.1	DUF3094 family protein	-
R6U48_RS09975 (R6U48_09975)	-	2124502..2124951 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
R6U48_RS09980 (R6U48_09980)	-	2124948..2125577 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
R6U48_RS09985 (R6U48_09985)	-	2125710..2126135 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
R6U48_RS09990 (R6U48_09990)	-	2126132..2126602 (+)	471	WP_003103866.1	hypothetical protein	-
R6U48_RS09995 (R6U48_09995)	-	2126599..2127288 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
R6U48_RS10000 (R6U48_10000)	-	2127394..2127603 (+)	210	WP_003094660.1	hypothetical protein	-
R6U48_RS10005 (R6U48_10005)	yacG	2127640..2127840 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
R6U48_RS10010 (R6U48_10010)	coaE	2127837..2128448 (-)	612	WP_031631884.1	dephospho-CoA kinase	-
R6U48_RS10015 (R6U48_10015)	pilD	2128445..2129317 (-)	873	WP_003107301.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
R6U48_RS10020 (R6U48_10020)	pilC	2129318..2130535 (-)	1218	WP_031631883.1	type II secretion system F family protein	Machinery gene
R6U48_RS10025 (R6U48_10025)	pilB	2130539..2132239 (-)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
R6U48_RS10030 (R6U48_10030)	pilA/pilAI	2132470..2132937 (+)	468	WP_003161762.1	pilin	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=822569 R6U48_RS10015 WP_003107301.1 2128445..2129317(-) (pilD) [Pseudomonas aeruginosa strain CPA0087]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=822569 R6U48_RS10015 WP_003107301.1 2128445..2129317(-) (pilD) [Pseudomonas aeruginosa strain CPA0087]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469