Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QFX54_RS07845 Genome accession   NZ_CP123750
Coordinates   1616858..1617544 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain 1.9a     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1611858..1622544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX54_RS07825 rpsT 1612772..1613023 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  QFX54_RS07830 holA 1613068..1614042 (-) 975 WP_304984666.1 DNA polymerase III subunit delta -
  QFX54_RS07835 comEC 1614099..1616300 (-) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFX54_RS07840 - 1616305..1616766 (-) 462 WP_000439693.1 ComE operon protein 2 -
  QFX54_RS07845 comEA 1616858..1617544 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  QFX54_RS07850 - 1617584..1618300 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  QFX54_RS07855 rsfS 1618303..1618656 (-) 354 WP_001088022.1 ribosome silencing factor -
  QFX54_RS07860 yqeK 1618657..1619241 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QFX54_RS07865 nadD 1619231..1619800 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QFX54_RS07870 yhbY 1619803..1620093 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  QFX54_RS07875 aroE 1620097..1620903 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  QFX54_RS07880 yqeH 1620917..1622017 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=822463 QFX54_RS07845 WP_001792568.1 1616858..1617544(-) (comEA) [Staphylococcus aureus strain 1.9a]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=822463 QFX54_RS07845 WP_001792568.1 1616858..1617544(-) (comEA) [Staphylococcus aureus strain 1.9a]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969