Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX54_RS02490 Genome accession   NZ_CP123750
Coordinates   523894..524463 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.9a     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 518894..529463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX54_RS02465 cysE 520107..520754 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  QFX54_RS02470 cysS 520738..522138 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QFX54_RS02475 - 522131..522535 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX54_RS02480 rlmB 522543..523289 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX54_RS02485 - 523289..523813 (+) 525 WP_000664738.1 NYN domain-containing protein -
  QFX54_RS02490 sigH 523894..524463 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX54_RS02495 rpmG 524578..524721 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX54_RS02500 secE 524777..524959 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  QFX54_RS02505 nusG 524972..525520 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX54_RS02510 rplK 525701..526123 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX54_RS02515 rplA 526331..527023 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX54_RS02520 rplJ 527295..527795 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  QFX54_RS02525 rplL 527838..528206 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX54_RS02530 - 528381..528989 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=822444 QFX54_RS02490 WP_000872873.1 523894..524463(+) (sigH) [Staphylococcus aureus strain 1.9a]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=822444 QFX54_RS02490 WP_000872873.1 523894..524463(+) (sigH) [Staphylococcus aureus strain 1.9a]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984