Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX51_RS11485 Genome accession   NZ_CP123749
Coordinates   2266976..2267545 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2261976..2272545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX51_RS11445 - 2262450..2263058 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  QFX51_RS11450 rplL 2263233..2263601 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX51_RS11455 rplJ 2263644..2264144 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QFX51_RS11460 rplA 2264416..2265108 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX51_RS11465 rplK 2265316..2265738 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX51_RS11470 nusG 2265919..2266467 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX51_RS11475 secE 2266480..2266662 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  QFX51_RS11480 rpmG 2266718..2266861 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX51_RS11485 sigH 2266976..2267545 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX51_RS11490 - 2267626..2268150 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QFX51_RS11495 rlmB 2268150..2268896 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX51_RS11500 - 2268904..2269308 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX51_RS11505 cysS 2269301..2270701 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QFX51_RS11510 cysE 2270685..2271332 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=822433 QFX51_RS11485 WP_000872873.1 2266976..2267545(-) (sigH) [Staphylococcus aureus strain 1.1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=822433 QFX51_RS11485 WP_000872873.1 2266976..2267545(-) (sigH) [Staphylococcus aureus strain 1.1]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984