Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QFX51_RS06380 Genome accession   NZ_CP123749
Coordinates   1221377..1221874 (+) Length   165 a.a.
NCBI ID   WP_304984668.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1216377..1226874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX51_RS06340 - 1216421..1217407 (+) 987 WP_000161314.1 ROK family glucokinase -
  QFX51_RS06345 - 1217407..1217736 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QFX51_RS06350 - 1217733..1218356 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX51_RS06355 comGA 1218408..1219382 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX51_RS06360 comGB 1219354..1220424 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX51_RS06365 comGC 1220438..1220749 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX51_RS06370 comGD 1220727..1221173 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX51_RS06375 comGE 1221160..1221459 (+) 300 WP_304984667.1 competence protein ComGE Machinery gene
  QFX51_RS06380 comGF 1221377..1221874 (+) 498 WP_304984668.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX51_RS06385 - 1221971..1222117 (+) 147 WP_001789879.1 hypothetical protein -
  QFX51_RS06390 - 1222107..1222631 (+) 525 WP_001015117.1 shikimate kinase -
  QFX51_RS06395 gcvT 1222790..1223881 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX51_RS06400 gcvPA 1223901..1225247 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QFX51_RS06405 gcvPB 1225240..1226712 (+) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19178.95 Da        Isoelectric Point: 10.3044

>NTDB_id=822422 QFX51_RS06380 WP_304984668.1 1221377..1221874(+) (comGF) [Staphylococcus aureus strain 1.1]
MILSKVTNKFVLFQKIPLLIKRHIYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVKT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=822422 QFX51_RS06380 WP_304984668.1 1221377..1221874(+) (comGF) [Staphylococcus aureus strain 1.1]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATATATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGAAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

98.788

100

0.988
  comGF Staphylococcus aureus N315

95.152

100

0.952