Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R6K63_RS20470 Genome accession   NZ_CP137556
Coordinates   4332634..4333140 (-) Length   168 a.a.
NCBI ID   WP_023436031.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CDC1270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4327634..4338140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6K63_RS20455 - 4328219..4330255 (-) 2037 WP_023436028.1 ParB/RepB/Spo0J family partition protein -
  R6K63_RS20460 - 4330336..4331160 (-) 825 WP_023436029.1 DUF932 domain-containing protein -
  R6K63_RS20465 - 4331759..4332568 (+) 810 WP_023436030.1 hypothetical protein -
  R6K63_RS20470 radC 4332634..4333140 (-) 507 WP_023436031.1 RadC family protein Machinery gene
  R6K63_RS20475 - 4333557..4334699 (+) 1143 WP_071556422.1 toll/interleukin-1 receptor domain-containing protein -
  R6K63_RS20480 - 4334703..4335290 (+) 588 WP_058201342.1 hypothetical protein -
  R6K63_RS20485 - 4335334..4335819 (+) 486 WP_023436033.1 TIR domain-containing protein -
  R6K63_RS20490 - 4335836..4336498 (-) 663 WP_023436034.1 uracil-DNA glycosylase -
  R6K63_RS20495 - 4336495..4337631 (-) 1137 WP_058201343.1 nucleoside triphosphate pyrophosphohydrolase family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18767.37 Da        Isoelectric Point: 6.6104

>NTDB_id=822364 R6K63_RS20470 WP_023436031.1 4332634..4333140(-) (radC) [Pseudomonas aeruginosa strain CDC1270]
MSQLSLSSDASLLVRDGHGRYLPASADQILEAARRVIDQKMQRGTEFSSPAVVKEYLRTKLAGFEHEVFAILFLDTRHRL
IEYVEMFRGTIDQASVYPREVVKEALQHNAAAVIFAHNHPSGNLEPSAADRTLTQRLKEALALVEVRTLDHVIVAGDRTT
AFAELGWL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=822364 R6K63_RS20470 WP_023436031.1 4332634..4333140(-) (radC) [Pseudomonas aeruginosa strain CDC1270]
ATGTCGCAGCTTTCCCTCTCTTCCGATGCCTCGCTGCTGGTGCGTGACGGCCATGGCCGCTATCTGCCGGCGTCGGCCGA
CCAGATTCTGGAGGCCGCGCGTCGGGTCATCGACCAGAAGATGCAGCGTGGTACCGAGTTCAGTTCGCCGGCAGTGGTCA
AGGAGTATCTGCGCACCAAACTCGCCGGCTTCGAGCATGAGGTCTTCGCAATCCTGTTCCTCGACACGCGCCATCGGCTG
ATCGAGTACGTCGAGATGTTCCGCGGCACCATCGACCAGGCATCGGTGTATCCGCGCGAGGTGGTCAAGGAGGCGCTGCA
GCACAATGCGGCGGCGGTGATCTTCGCGCACAACCATCCGAGCGGGAATCTCGAGCCGAGCGCCGCCGACAGGACGCTGA
CCCAGCGGCTCAAGGAGGCGCTGGCGCTGGTCGAGGTGCGCACGCTGGATCATGTCATTGTCGCTGGCGACCGGACGACG
GCATTTGCCGAACTCGGTTGGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.794

80.952

0.387