Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX48_RS10700 Genome accession   NZ_CP123746
Coordinates   2141258..2141653 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2136258..2146653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX48_RS10675 thiE 2136858..2137499 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  QFX48_RS10680 thiM 2137501..2138292 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  QFX48_RS10685 thiD 2138276..2139106 (-) 831 WP_304984645.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX48_RS10690 tenA 2139099..2139788 (-) 690 WP_000396077.1 thiaminase II -
  QFX48_RS10695 sceD 2140174..2140869 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  QFX48_RS10700 ssb 2141258..2141653 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX48_RS10705 - 2141847..2142287 (+) 441 WP_000846746.1 YwpF-like family protein -
  QFX48_RS10710 fabZ 2142346..2142786 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX48_RS10715 murA 2142820..2144085 (-) 1266 WP_049308991.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX48_RS10720 - 2144196..2144429 (-) 234 WP_000384523.1 DUF1146 family protein -
  QFX48_RS10725 - 2144561..2144653 (-) 93 WP_001790611.1 hypothetical protein -
  QFX48_RS10730 - 2144991..2145395 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=822314 QFX48_RS10700 WP_000932694.1 2141258..2141653(-) (ssb) [Staphylococcus aureus strain 1.3]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=822314 QFX48_RS10700 WP_000932694.1 2141258..2141653(-) (ssb) [Staphylococcus aureus strain 1.3]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992