Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX58_RS11490 Genome accession   NZ_CP123745
Coordinates   2266723..2267292 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2261723..2272292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX58_RS11450 - 2262197..2262805 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  QFX58_RS11455 rplL 2262980..2263348 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX58_RS11460 rplJ 2263391..2263891 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QFX58_RS11465 rplA 2264163..2264855 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX58_RS11470 rplK 2265063..2265485 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX58_RS11475 nusG 2265666..2266214 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX58_RS11480 secE 2266227..2266409 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  QFX58_RS11485 rpmG 2266465..2266608 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX58_RS11490 sigH 2266723..2267292 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX58_RS11495 - 2267373..2267897 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QFX58_RS11500 rlmB 2267897..2268643 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX58_RS11505 - 2268651..2269055 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX58_RS11510 cysS 2269048..2270448 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QFX58_RS11515 cysE 2270432..2271079 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=822273 QFX58_RS11490 WP_000872873.1 2266723..2267292(-) (sigH) [Staphylococcus aureus strain 1.7]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=822273 QFX58_RS11490 WP_000872873.1 2266723..2267292(-) (sigH) [Staphylococcus aureus strain 1.7]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984