Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   R2B38_RS23365 Genome accession   NZ_CP137549
Coordinates   5210305..5211714 (-) Length   469 a.a.
NCBI ID   WP_318017995.1    Uniprot ID   -
Organism   Streptomyces sp. N50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5205305..5216714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B38_RS23345 (R2B38_23345) - 5205868..5206407 (-) 540 WP_019064956.1 SigE family RNA polymerase sigma factor -
  R2B38_RS23350 (R2B38_23350) - 5206749..5207678 (-) 930 WP_318017993.1 A/G-specific adenine glycosylase -
  R2B38_RS23355 (R2B38_23355) - 5208235..5209080 (+) 846 WP_318017994.1 hypothetical protein -
  R2B38_RS23360 (R2B38_23360) disA 5209109..5210167 (-) 1059 WP_318021770.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  R2B38_RS23365 (R2B38_23365) radA/sms 5210305..5211714 (-) 1410 WP_318017995.1 DNA repair protein RadA Machinery gene
  R2B38_RS23370 (R2B38_23370) - 5211913..5213610 (+) 1698 WP_318017996.1 BACON domain-containing protein -
  R2B38_RS23375 (R2B38_23375) - 5213615..5214481 (-) 867 WP_318017997.1 hypothetical protein -
  R2B38_RS23380 (R2B38_23380) - 5214565..5215503 (+) 939 WP_318017998.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49652.80 Da        Isoelectric Point: 8.2544

>NTDB_id=822267 R2B38_RS23365 WP_318017995.1 5210305..5211714(-) (radA/sms) [Streptomyces sp. N50]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTSPGRVTTSAVPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVIEVADIGDALRVLPRSRKREAPRDAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=822267 R2B38_RS23365 WP_318017995.1 5210305..5211714(-) (radA/sms) [Streptomyces sp. N50]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGGACGACGTCCCCGGGCC
GCGTCACCACCTCCGCGGTACCGATCGGCCAGGTCGACGGCCGCACGGCCACCGCCCGCTCGACCGGCGTCCCCGAGCTG
GACCGGGTCCTCGGCGGCGGCCTGGTCCCCGGAGCGGTGGTCCTCGTAGCGGGCGAACCGGGCGTGGGCAAGTCGACCCT
CCTCCTCGACGTGGCGGCGAAGTCGGCGAGCGAGGAGCACCGCACGCTCTACGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCCGCCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTCTACCTCGCCGCCGAGACCGATCTGGCCACGATCCTG
GGCCACTTGGACGCGGTGAAGCCCTCCCTCCTCATCCTGGACTCCGTCCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGAGGCATGTCCACGCTCC
TCGTAGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTGGAGCACCTGGTGGACGTGGTCCTCTCCTTC
GAGGGCGACCGCCACGCACGCCTGCGCCTCGTACGGGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTCCACGACGAGGGCATCACCGGCCTGGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCGGAGCCGGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCTTGGTGGCCGAGGTCCAGGCCCTCACGGTGGACTCCCAGATC
CCCTCCCCCCGCCGCACCACCTCGGGCCTGGAGACATCCCGGGTCTCGATGATGCTGGCGGTCCTGGAACAACGCGGCAA
GATCAGCGCCCTGGGCAAGCGAGACATCTACTCCGCAACGGTGGGCGGAGTAAAACTCACCGAACCGGCAGCAGATCTGG
CCATCGCCCTCGCCCTGGCCTCCGCGGCGAGCGACACCCCCCTCCCCAAGAACCTGGTGGCGATCGGCGAAGTAGGCCTC
GCGGGCGAGGTCAGAAGGGTCACAGGCGTCCAGCGCAGACTCTCCGAAGCACACCGCCTGGGCTTCACCCACGCACTCGT
CCCGAGCGACCCGGGCAAGATCCCAGCAGGCATGAAGGTCATCGAAGTAGCCGACATAGGAGACGCTCTCCGGGTCCTTC
CAAGGTCCCGTAAGCGAGAGGCCCCACGGGACGCCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.375

0.418
  radA Streptococcus mitis SK321

42.478

96.375

0.409
  radA Streptococcus mitis NCTC 12261

42.478

96.375

0.409
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407