Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   R2B38_RS21900 Genome accession   NZ_CP137549
Coordinates   4908431..4909030 (+) Length   199 a.a.
NCBI ID   WP_019070339.1    Uniprot ID   A0ABW6M936
Organism   Streptomyces sp. N50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4903431..4914030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B38_RS21885 (R2B38_21885) - 4905332..4906858 (+) 1527 WP_318017752.1 substrate-binding domain-containing protein -
  R2B38_RS21890 (R2B38_21890) - 4906991..4907710 (-) 720 WP_318017753.1 SLATT domain-containing protein -
  R2B38_RS21895 (R2B38_21895) - 4908010..4908357 (+) 348 WP_318017754.1 YbaB/EbfC family nucleoid-associated protein -
  R2B38_RS21900 (R2B38_21900) recR 4908431..4909030 (+) 600 WP_019070339.1 recombination mediator RecR Machinery gene
  R2B38_RS21905 (R2B38_21905) - 4909023..4909682 (+) 660 WP_033284845.1 DUF5063 domain-containing protein -
  R2B38_RS21910 (R2B38_21910) - 4909887..4910237 (-) 351 WP_318017755.1 hypothetical protein -
  R2B38_RS21915 (R2B38_21915) - 4910400..4910672 (+) 273 WP_318017756.1 winged helix-turn-helix domain-containing protein -
  R2B38_RS21920 (R2B38_21920) - 4910680..4911429 (-) 750 WP_318017757.1 class I SAM-dependent methyltransferase -
  R2B38_RS21925 (R2B38_21925) - 4911426..4912547 (-) 1122 WP_318017758.1 asparagine synthase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21755.19 Da        Isoelectric Point: 4.9908

>NTDB_id=822261 R2B38_RS21900 WP_019070339.1 4908431..4909030(+) (recR) [Streptomyces sp. N50]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCGICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=822261 R2B38_RS21900 WP_019070339.1 4908431..4909030(+) (recR) [Streptomyces sp. N50]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAATTGGGGCGACTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGGCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGAAACGTCGCGCAGGAAGAACTGTGCGGGATCTGCCGCGACCCGCGCCGCGACCTCTCGGTG
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGGTCGAGCGCACCCGCGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGAGCGATCAGCCCGATCGAAGGTGTCGGACCCGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGTA
CGGTCACGGAACTGATCCTTGCCACGGACCCCAATCTGGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457