Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX58_RS03315 Genome accession   NZ_CP123745
Coordinates   657236..657631 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 652236..662631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX58_RS03285 - 653494..653898 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QFX58_RS03290 - 654236..654328 (+) 93 WP_001790611.1 hypothetical protein -
  QFX58_RS03295 - 654460..654693 (+) 234 WP_000384523.1 DUF1146 family protein -
  QFX58_RS03300 murA 654804..656069 (+) 1266 WP_049308991.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX58_RS03305 fabZ 656103..656543 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX58_RS03310 - 656602..657042 (-) 441 WP_000846746.1 YwpF-like family protein -
  QFX58_RS03315 ssb 657236..657631 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX58_RS03320 sceD 658020..658715 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  QFX58_RS03325 tenA 659101..659790 (+) 690 WP_000396077.1 thiaminase II -
  QFX58_RS03330 thiD 659783..660613 (+) 831 WP_304984645.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX58_RS03335 thiM 660597..661388 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  QFX58_RS03340 thiE 661390..662031 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=822243 QFX58_RS03315 WP_000932694.1 657236..657631(+) (ssb) [Staphylococcus aureus strain 1.7]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=822243 QFX58_RS03315 WP_000932694.1 657236..657631(+) (ssb) [Staphylococcus aureus strain 1.7]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992