Detailed information NTG0822243

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: R2B38_RS12635
• Genome accession: NZ_CP137549
• Coordinates: 2890548..2891834 (-)
• Length: 428 a.a.
• NCBI ID: WP_033285988.1
• Uniprot ID: A0ABW6MII4
• Organism: Streptomyces sp. N50
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2885548..2896834

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R2B38_RS12625 (R2B38_12625)	-	2886702..2889326 (-)	2625	WP_318016315.1	valine--tRNA ligase	-
R2B38_RS12630 (R2B38_12630)	-	2889463..2890470 (+)	1008	WP_318016316.1	hypothetical protein	-
R2B38_RS12635 (R2B38_12635)	clpX	2890548..2891834 (-)	1287	WP_033285988.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
R2B38_RS12640 (R2B38_12640)	clpP	2891994..2892674 (-)	681	WP_318016317.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R2B38_RS12645 (R2B38_12645)	clpP	2892725..2893327 (-)	603	WP_033285987.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R2B38_RS12650 (R2B38_12650)	tig	2893666..2895033 (-)	1368	WP_318016318.1	trigger factor	-
R2B38_RS12665 (R2B38_12665)	-	2895728..2895922 (-)	195	WP_318016319.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46841.63 Da
• Isoelectric Point: 4.7360

>NTDB_id=822243 R2B38_RS12635 WP_033285988.1 2890548..2891834(-) (clpX) [Streptomyces sp. N50]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKLIESRAGAKGIGFGATIRSKRELQAKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYERLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQGVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=822243 R2B38_RS12635 WP_033285988.1 2890548..2891834(-) (clpX) [Streptomyces sp. N50]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTCCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGTTACGTCGTCGGCCAGGAGTCG
GCGAAGAAGGCACTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACGGCGGCGGCCAGAGCCG
CGAGGACGCCATCGAGCTGGCGAAGTCCAACATCCTGCTGCTCGGCCCCACGGGCTCGGGCAAGACCCTCCTCGCCCAGA
CCCTGGCCCGTATGTTGAACGTGCCGTTCGCGATCGCCGACGCGACCGCGCTCACGGAGGCGGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
TGAGATCGACAAGGTCGCGCGGAAGAGCGAGAACCCGTCGATCACGCGCGATGTGAGCGGCGAGGGCGTCCAGCAGGCCC
TGTTGAAGATCCTGGAGGGCACCACGGCCTCGGTCCCGCCGCAGGGCGGCCGTAAACACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCTCGGGCCTGGAGAAGCTCATCGAGTCCAGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCGGGAGCTGCAGGCCAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTGAAGTTCGGCATGATCCCCGAGTTCATCGGCCGGCTGCCCGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCACTCGTCAAGCAGTACGAGCGCCTCTTCGAACTCGACGGTGT
GGAGCTGGACTTCGAGCGCGAGGCCCTCGAAGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGTGCGCGCGGCCTCC
GCGCCATCATGGAGGAAGTCCTCCAGGGCGTCATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACC
GCGGACGTCGTCCTCTCGAACGTCAACCCGACCCTGATCCCGCGCGACGCGCGGGGCCGCGGCCCGGGCGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.189	93.925	0.584
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.771	96.028	0.516