Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX62_RS11135 Genome accession   NZ_CP123744
Coordinates   2222785..2223354 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2217785..2228354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX62_RS11095 - 2218259..2218867 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  QFX62_RS11100 rplL 2219042..2219410 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX62_RS11105 rplJ 2219453..2219953 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  QFX62_RS11110 rplA 2220225..2220917 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX62_RS11115 rplK 2221125..2221547 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX62_RS11120 nusG 2221728..2222276 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX62_RS11125 secE 2222289..2222471 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  QFX62_RS11130 rpmG 2222527..2222670 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX62_RS11135 sigH 2222785..2223354 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX62_RS11140 - 2223435..2223959 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QFX62_RS11145 rlmB 2223959..2224705 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX62_RS11150 - 2224713..2225117 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX62_RS11155 cysS 2225110..2226510 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QFX62_RS11160 cysE 2226494..2227141 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=822233 QFX62_RS11135 WP_000872873.1 2222785..2223354(-) (sigH) [Staphylococcus aureus strain 1.8]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=822233 QFX62_RS11135 WP_000872873.1 2222785..2223354(-) (sigH) [Staphylococcus aureus strain 1.8]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984