Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   R5Y33_RS02330 Genome accession   NZ_CP137531
Coordinates   469390..471687 (-) Length   765 a.a.
NCBI ID   WP_002221163.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM741     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 464390..476687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y33_RS02310 hldA 464918..465889 (+) 972 WP_002217546.1 ADP-heptose synthase -
  R5Y33_RS02315 dcm 465926..467161 (+) 1236 WP_002221168.1 DNA (cytosine-5-)-methyltransferase -
  R5Y33_RS02320 - 467163..468281 (+) 1119 WP_002221166.1 HNH endonuclease -
  R5Y33_RS02325 rfaD 468322..469326 (+) 1005 WP_002221165.1 ADP-glyceromanno-heptose 6-epimerase -
  R5Y33_RS02330 clpC 469390..471687 (-) 2298 WP_002221163.1 ATP-dependent Clp protease ATP-binding subunit ClpA Regulator
  R5Y33_RS02335 clpS 471689..471991 (-) 303 WP_002221161.1 ATP-dependent Clp protease adapter ClpS -
  R5Y33_RS02340 - 472234..472437 (+) 204 WP_002217533.1 cold-shock protein -
  R5Y33_RS02345 pmbA 472734..474065 (-) 1332 WP_002221160.1 metalloprotease PmbA -
  R5Y33_RS02350 yjgA 474220..474726 (+) 507 WP_002224594.1 ribosome biogenesis factor YjgA -
  R5Y33_RS02355 - 474773..475507 (+) 735 WP_002221158.1 hypothetical protein -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 84475.28 Da        Isoelectric Point: 6.6432

>NTDB_id=822164 R5Y33_RS02330 WP_002221163.1 469390..471687(-) (clpC) [Neisseria meningitidis strain EXNM741]
MLAPELEQILQQLYREARKAHYEFISLEHLLLVLIEEDASVPNVLKLCGADLKVVSEQLAASVAENTPLIPEHLLDTVET
RPTLGFQRVMQRAMVHTQSAGKAAVEPLDVLVALMSETDSHTVYFLKLQSVTRFEVLRCIAHGSPDEDEDEDDGNYSSDG
MDDDNENRAKPGKNPLSAYTVNLNAEVKAGRIDPLIGRKHEMERLVQILCRRRKNNPLLVGEAGVGKTALAEGLAHQIVN
GGIPDALKDAEVYALDMGSLLAGTKYRGDFEARVKSVLKQLEKIPHAILFIDEIHTIIGAGSTSGGTMDASNLLKPALAK
GSLRCIGATTYDEYRTIFDKDHALSRRFQKIDVVEPTVSETVQILRGLKPMFEAFHQVRYTQGALEAAAELSARYINERF
LPDKAIDVMDEAGAAQRILPKSKQKKVIGKAQIETVIAKVSRIPEKTVSHDDKQVLQFLGRDLKNMVYGQENAIDALVAA
VKMSRSGLALPDKPIGSFLFSGPTGVGKTEAAKQLAYSLGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAV
NKQPHCVLLLDEIEKAHPDIFNVLLQVMDAGKLTDNNGKSADFRNVILIMTTNAGAESLSRPSLGFTAKRERGDEMQAIN
KLFTPEFRNRLDAIIPFAPLSEPIIVKVVDKFLLQLEHQLLDKKVEAEFTSALHKYLAEKGFDPQMGARPMHRLIQEKIR
KPLADELLFGKLSDGGFVRIDWDAAKEEAVLKFKKSKVKIKTASA

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=822164 R5Y33_RS02330 WP_002221163.1 469390..471687(-) (clpC) [Neisseria meningitidis strain EXNM741]
ATGCTTGCACCCGAATTGGAACAGATTTTGCAGCAGCTTTACCGCGAGGCGCGTAAGGCTCATTATGAATTTATCAGCCT
CGAGCATCTGCTTTTGGTACTCATCGAAGAAGATGCCTCCGTGCCGAACGTCTTAAAACTATGCGGCGCGGATTTGAAAG
TGGTGTCCGAACAGCTCGCCGCCAGCGTTGCCGAAAACACCCCCCTGATTCCCGAACACCTTTTAGACACGGTCGAAACA
CGGCCCACGCTCGGCTTCCAACGCGTGATGCAACGGGCGATGGTGCATACCCAGTCTGCCGGAAAAGCCGCAGTCGAACC
GTTGGACGTTTTGGTCGCGCTGATGAGCGAAACCGACAGCCACACCGTCTATTTCCTCAAGCTGCAATCGGTTACGCGTT
TTGAAGTTTTGCGCTGTATTGCCCACGGCTCTCCCGATGAAGATGAAGATGAAGACGATGGCAACTATTCTTCAGACGGC
ATGGACGACGATAATGAAAACCGCGCCAAACCGGGCAAAAACCCTTTATCGGCGTACACCGTCAACCTCAACGCCGAAGT
CAAAGCCGGCCGTATCGACCCTTTGATTGGTCGCAAACACGAAATGGAACGGCTGGTGCAAATCCTATGCCGCCGCCGCA
AAAACAATCCGCTTTTGGTCGGCGAAGCGGGCGTGGGCAAAACCGCGCTGGCGGAAGGTTTGGCACATCAAATCGTCAAC
GGCGGCATTCCAGACGCGCTCAAAGATGCCGAAGTGTACGCGCTGGATATGGGCTCGCTGTTGGCGGGCACGAAATACCG
CGGCGACTTTGAAGCGCGGGTCAAATCCGTCTTGAAACAGCTCGAAAAAATCCCGCACGCCATTTTGTTTATCGACGAAA
TCCACACCATCATCGGCGCGGGCAGCACCAGCGGCGGCACCATGGACGCGTCCAACCTGCTCAAACCCGCGCTGGCAAAA
GGTTCGCTGCGCTGCATCGGCGCGACCACCTACGACGAATACCGCACCATTTTCGACAAAGACCATGCCTTAAGCCGCCG
CTTCCAAAAAATCGACGTGGTCGAACCCACCGTTTCCGAAACCGTTCAAATCCTGCGCGGCTTGAAACCGATGTTTGAAG
CCTTCCACCAAGTCCGCTACACTCAAGGCGCACTCGAAGCCGCCGCCGAACTCTCCGCACGCTACATCAACGAGCGTTTC
CTGCCCGACAAAGCCATCGACGTAATGGATGAAGCAGGCGCGGCGCAACGGATTCTGCCCAAATCCAAACAGAAAAAAGT
CATCGGCAAAGCACAAATCGAAACCGTCATCGCCAAAGTTTCGCGGATTCCCGAAAAAACCGTGTCGCACGACGACAAAC
AAGTGCTGCAATTCCTCGGTCGCGATTTGAAAAACATGGTTTACGGTCAAGAAAACGCCATCGACGCGCTGGTTGCCGCC
GTCAAAATGTCGCGTTCCGGCCTTGCCCTGCCCGACAAACCGATAGGCAGCTTCCTCTTCTCCGGCCCGACCGGCGTGGG
CAAAACCGAAGCCGCCAAACAGCTTGCCTACTCGCTGGGCGTACCGCTGCAACGCTTTGATATGTCCGAATACATGGAAC
GCCATGCCGTATCGCGCCTCATCGGCGCGCCACCGGGCTACGTCGGCTTTGAACAAGGCGGCCTTTTGACCGAAGCCGTC
AACAAACAGCCGCATTGCGTATTGCTCTTGGACGAAATCGAAAAAGCCCACCCCGACATTTTCAACGTCCTCCTGCAAGT
CATGGACGCAGGCAAACTGACCGACAACAACGGCAAGAGTGCCGATTTCCGCAACGTCATCCTGATTATGACCACCAACG
CAGGCGCGGAAAGCCTCAGCCGCCCCAGCCTCGGCTTTACCGCCAAGCGCGAACGCGGCGACGAAATGCAGGCAATCAAC
AAGCTCTTCACGCCCGAGTTCCGCAACCGCTTGGACGCGATTATCCCGTTTGCACCCTTGTCCGAACCCATCATCGTCAA
AGTCGTGGACAAATTCCTGCTCCAGCTCGAACACCAGCTCCTCGACAAAAAAGTCGAAGCCGAATTCACGTCGGCATTGC
ACAAATATCTGGCGGAAAAAGGTTTCGACCCGCAAATGGGCGCGCGCCCGATGCACCGCCTGATTCAGGAAAAAATCCGC
AAACCGCTCGCCGACGAACTCCTGTTCGGCAAACTATCCGACGGCGGCTTCGTGCGGATAGACTGGGATGCGGCAAAAGA
AGAAGCCGTGTTGAAGTTTAAGAAAAGCAAGGTCAAAATAAAAACCGCCTCCGCGTAA

Domains

Predicted by InterProScan.

Clp amino terminal domain, pathogenicity island component (Clp_N)

(15-61)

ATPase family associated with various cellular activities (AAA) (AAA)

(218-350)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(660-740)

AAA domain (Cdc48 subfamily) (AAA_2)

(493-654)

AAA lid domain (AAA_lid_9)

(358-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

38.386

100

0.41
  clpC Bacillus subtilis subsp. subtilis str. 168

37.129

100

0.392
  clpA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.609

94.248

0.392