Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX57_RS03310 Genome accession   NZ_CP123743
Coordinates   657300..657695 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 652300..662695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX57_RS03280 - 653558..653962 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QFX57_RS03285 - 654300..654392 (+) 93 WP_001790611.1 hypothetical protein -
  QFX57_RS03290 - 654524..654757 (+) 234 WP_000384523.1 DUF1146 family protein -
  QFX57_RS03295 murA 654868..656133 (+) 1266 WP_049308991.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX57_RS03300 fabZ 656167..656607 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX57_RS03305 - 656666..657106 (-) 441 WP_000846746.1 YwpF-like family protein -
  QFX57_RS03310 ssb 657300..657695 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX57_RS03315 sceD 658084..658779 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  QFX57_RS03320 tenA 659165..659854 (+) 690 WP_000396077.1 thiaminase II -
  QFX57_RS03325 thiD 659847..660677 (+) 831 WP_304984645.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX57_RS03330 thiM 660661..661452 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  QFX57_RS03335 thiE 661454..662095 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=822164 QFX57_RS03310 WP_000932694.1 657300..657695(+) (ssb) [Staphylococcus aureus strain 1.5]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=822164 QFX57_RS03310 WP_000932694.1 657300..657695(+) (ssb) [Staphylococcus aureus strain 1.5]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992