Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX44_RS02520 Genome accession   NZ_CP123742
Coordinates   531541..532110 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 526541..537110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX44_RS02495 cysE 527754..528401 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  QFX44_RS02500 cysS 528385..529785 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QFX44_RS02505 - 529778..530182 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX44_RS02510 rlmB 530190..530936 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX44_RS02515 - 530936..531460 (+) 525 WP_000664738.1 NYN domain-containing protein -
  QFX44_RS02520 sigH 531541..532110 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX44_RS02525 rpmG 532225..532368 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX44_RS02530 secE 532424..532606 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  QFX44_RS02535 nusG 532619..533167 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX44_RS02540 rplK 533348..533770 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX44_RS02545 rplA 533978..534670 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX44_RS02550 rplJ 534942..535442 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  QFX44_RS02555 rplL 535485..535853 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX44_RS02560 - 536028..536636 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=822125 QFX44_RS02520 WP_000872873.1 531541..532110(+) (sigH) [Staphylococcus aureus strain 1.10]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=822125 QFX44_RS02520 WP_000872873.1 531541..532110(+) (sigH) [Staphylococcus aureus strain 1.10]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984