Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QFX50_RS08255 Genome accession   NZ_CP123740
Coordinates   1674129..1675115 (+) Length   328 a.a.
NCBI ID   WP_304984497.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1669129..1680115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX50_RS08230 opp4B 1669341..1670303 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  QFX50_RS08235 opp4C 1670315..1671196 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  QFX50_RS08240 trpS 1671238..1672227 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  QFX50_RS08245 spxA 1672522..1672917 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  QFX50_RS08250 mecA 1673289..1674008 (+) 720 WP_001217728.1 adaptor protein MecA -
  QFX50_RS08255 coiA 1674129..1675115 (+) 987 WP_304984497.1 competence protein CoiA Machinery gene
  QFX50_RS08260 pepF 1675163..1676971 (+) 1809 WP_304984498.1 oligoendopeptidase F -
  QFX50_RS08265 yjbH 1677431..1678237 (-) 807 WP_000896696.1 protease adaptor protein YjbH -
  QFX50_RS08270 - 1678260..1678625 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  QFX50_RS08275 - 1678729..1679322 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  QFX50_RS08280 - 1679508..1679855 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38913.57 Da        Isoelectric Point: 9.6528

>NTDB_id=822054 QFX50_RS08255 WP_304984497.1 1674129..1675115(+) (coiA) [Staphylococcus aureus strain 2.3b]
MLVALKEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=822054 QFX50_RS08255 WP_304984497.1 1674129..1675115(+) (coiA) [Staphylococcus aureus strain 2.3b]
ATGTTAGTAGCTTTAAAGGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979