Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX50_RS06310 Genome accession   NZ_CP123740
Coordinates   1278647..1279216 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3b     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273647..1284216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX50_RS06285 cysE 1274860..1275507 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  QFX50_RS06290 cysS 1275491..1276891 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  QFX50_RS06295 - 1276884..1277288 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX50_RS06300 rlmB 1277296..1278042 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX50_RS06305 - 1278042..1278566 (+) 525 WP_000664738.1 NYN domain-containing protein -
  QFX50_RS06310 sigH 1278647..1279216 (+) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX50_RS06315 rpmG 1279331..1279474 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX50_RS06320 secE 1279530..1279712 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QFX50_RS06325 nusG 1279725..1280273 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX50_RS06330 rplK 1280454..1280876 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX50_RS06335 rplA 1281084..1281776 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX50_RS06340 rplJ 1282048..1282548 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  QFX50_RS06345 rplL 1282591..1282959 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX50_RS06350 - 1283134..1283742 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=822049 QFX50_RS06310 WP_000872876.1 1278647..1279216(+) (sigH) [Staphylococcus aureus strain 2.3b]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=822049 QFX50_RS06310 WP_000872876.1 1278647..1279216(+) (sigH) [Staphylococcus aureus strain 2.3b]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984