Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX50_RS00635 Genome accession   NZ_CP123740
Coordinates   104742..105137 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 99742..110137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX50_RS00610 thiE 100341..100982 (-) 642 WP_000483156.1 thiamine phosphate synthase -
  QFX50_RS00615 thiM 100984..101775 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  QFX50_RS00620 thiD 101759..102589 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX50_RS00625 tenA 102582..103272 (-) 691 Protein_119 thiaminase II -
  QFX50_RS00630 sceD 103658..104353 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  QFX50_RS00635 ssb 104742..105137 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX50_RS00640 - 105331..105771 (+) 441 WP_000846746.1 YwpF-like family protein -
  QFX50_RS00645 fabZ 105829..106269 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX50_RS00650 murA 106303..107568 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX50_RS00655 - 107679..107912 (-) 234 WP_000384523.1 DUF1146 family protein -
  QFX50_RS00660 - 108044..108136 (-) 93 WP_001790611.1 hypothetical protein -
  QFX50_RS00665 - 108531..108935 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=822039 QFX50_RS00635 WP_000932694.1 104742..105137(-) (ssb) [Staphylococcus aureus strain 2.3b]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=822039 QFX50_RS00635 WP_000932694.1 104742..105137(-) (ssb) [Staphylococcus aureus strain 2.3b]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992