Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFX46_RS11320 Genome accession   NZ_CP123739
Coordinates   2229790..2230359 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2224790..2235359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX46_RS11280 - 2225264..2225872 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  QFX46_RS11285 rplL 2226047..2226415 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QFX46_RS11290 rplJ 2226458..2226958 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  QFX46_RS11295 rplA 2227230..2227922 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QFX46_RS11300 rplK 2228130..2228552 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QFX46_RS11305 nusG 2228733..2229281 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QFX46_RS11310 secE 2229294..2229476 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QFX46_RS11315 rpmG 2229532..2229675 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QFX46_RS11320 sigH 2229790..2230359 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFX46_RS11325 - 2230440..2230964 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QFX46_RS11330 rlmB 2230964..2231710 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFX46_RS11335 - 2231718..2232122 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QFX46_RS11340 cysS 2232115..2233515 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  QFX46_RS11345 cysE 2233499..2234146 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=822032 QFX46_RS11320 WP_000872876.1 2229790..2230359(-) (sigH) [Staphylococcus aureus strain 2.5]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=822032 QFX46_RS11320 WP_000872876.1 2229790..2230359(-) (sigH) [Staphylococcus aureus strain 2.5]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984