Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QFX46_RS06520 Genome accession   NZ_CP123739
Coordinates   1226160..1226606 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1221160..1231606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX46_RS06485 - 1221654..1221857 (+) 204 WP_000087561.1 YqgQ family protein -
  QFX46_RS06490 - 1221854..1222840 (+) 987 WP_000161314.1 ROK family glucokinase -
  QFX46_RS06495 - 1222840..1223169 (+) 330 WP_304984508.1 MTH1187 family thiamine-binding protein -
  QFX46_RS06500 - 1223166..1223789 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX46_RS06505 comGA 1223841..1224815 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX46_RS06510 comGB 1224787..1225857 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX46_RS06515 comGC 1225871..1226182 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX46_RS06520 comGD 1226160..1226606 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX46_RS06525 comGE 1226593..1226892 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QFX46_RS06530 comGF 1226810..1227307 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX46_RS06535 - 1227404..1227550 (+) 147 WP_001789879.1 hypothetical protein -
  QFX46_RS06540 - 1227540..1228064 (+) 525 WP_001015119.1 shikimate kinase -
  QFX46_RS06545 gcvT 1228223..1229314 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX46_RS06550 gcvPA 1229334..1230680 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=822018 QFX46_RS06520 WP_001788899.1 1226160..1226606(+) (comGD) [Staphylococcus aureus strain 2.5]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=822018 QFX46_RS06520 WP_001788899.1 1226160..1226606(+) (comGD) [Staphylococcus aureus strain 2.5]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1