Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX46_RS03185 Genome accession   NZ_CP123739
Coordinates   638463..638858 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 633463..643858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX46_RS03155 - 634665..635069 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QFX46_RS03160 - 635464..635556 (+) 93 WP_001790611.1 hypothetical protein -
  QFX46_RS03165 - 635688..635921 (+) 234 WP_000384523.1 DUF1146 family protein -
  QFX46_RS03170 murA 636032..637297 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX46_RS03175 fabZ 637331..637771 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX46_RS03180 - 637829..638269 (-) 441 WP_000846746.1 YwpF-like family protein -
  QFX46_RS03185 ssb 638463..638858 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX46_RS03190 sceD 639247..639942 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  QFX46_RS03195 tenA 640328..641018 (+) 691 Protein_629 thiaminase II -
  QFX46_RS03200 thiD 641011..641841 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX46_RS03205 thiM 641825..642616 (+) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  QFX46_RS03210 thiE 642618..643259 (+) 642 WP_000483156.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=822001 QFX46_RS03185 WP_000932694.1 638463..638858(+) (ssb) [Staphylococcus aureus strain 2.5]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=822001 QFX46_RS03185 WP_000932694.1 638463..638858(+) (ssb) [Staphylococcus aureus strain 2.5]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992